Andreas Tille pushed to branch master at Debian Med / bedtools
Commits: 24473a22 by Andreas Tille at 2020-10-28T16:40:50+01:00 Fix permisions of .sam files - - - - - 7d707843 by Andreas Tille at 2020-10-28T16:41:15+01:00 Delete test binary to make sure it will not be installed - - - - - 438dfd51 by Andreas Tille at 2020-10-28T16:41:40+01:00 DEP3 - - - - - 3 changed files: - debian/changelog - debian/patches/fix_intersect_test.patch - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,5 +1,6 @@ bedtools (2.29.2+dfsg-4) UNRELEASED; urgency=medium + [ Michael R. Crusoe ] * Team upload. * Remove the need for samtools via patch from upstream. * Include patch from Bernhard Übelacker to fix 32-bit builds. TODO: the @@ -9,6 +10,11 @@ bedtools (2.29.2+dfsg-4) UNRELEASED; urgency=medium * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) + [ Andreas Tille ] + * Fix permisions of .sam files + * Delete test binary to make sure it will not be installed + * DEP3 + -- Michael R. Crusoe <[email protected]> Fri, 14 Feb 2020 16:50:58 +0100 bedtools (2.29.2+dfsg-3) unstable; urgency=medium ===================================== debian/patches/fix_intersect_test.patch ===================================== @@ -1,3 +1,7 @@ +Author: Steffen Moeller +Last-Update: 2020-01-23 11:47:03 +0100 +Description: Fix the intersect test + Index: bedtools/test/intersect/new_test-intersect.sh =================================================================== --- bedtools.orig/test/intersect/new_test-intersect.sh ===================================== debian/rules ===================================== @@ -43,6 +43,7 @@ override_dh_fixperms-arch: dh_fixperms chmod -x $(CURDIR)/debian/$(DEB_SOURCE)/usr/share/bedtools/genomes/*.genome find $(CURDIR)/debian -name "*.bed" -executable -exec chmod -x \{\} \; + find $(CURDIR)/debian -name "*.sam" -executable -exec chmod -x \{\} \; find $(CURDIR)/debian -name "*.sh" -not -executable -exec chmod +x \{\} \; override_dh_auto_test: @@ -51,6 +52,7 @@ ifneq (,$(filter $(DEB_HOST_ARCH),i386 kfreebsd-i386 hurd-i386 armel armhf mipse mv test/shuffle debian/ endif dh_auto_test + find . -name htsutil -delete ifneq (,$(filter $(DEB_HOST_ARCH),i386 kfreebsd-i386 hurd-i386 armel armhf mipsel)) mv debian/shuffle test/ endif View it on GitLab: https://salsa.debian.org/med-team/bedtools/-/compare/9889a387f292fabdb790f306a905cf805a56e55b...438dfd51ae9fcd6429bff4bdef1328ae54b98aab -- View it on GitLab: https://salsa.debian.org/med-team/bedtools/-/compare/9889a387f292fabdb790f306a905cf805a56e55b...438dfd51ae9fcd6429bff4bdef1328ae54b98aab You're receiving this email because of your account on salsa.debian.org.
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