Steffen Möller pushed to branch master at Debian Med / nim-hts
Commits: 2850046b by Steffen Möller at 2020-11-01T05:29:20+01:00 Addressed hickups for tests in cowbuilder - - - - - 4 changed files: - debian/control - + debian/patches/dontDoNestedTests.patch - + debian/patches/series - debian/rules Changes: ===================================== debian/control ===================================== @@ -5,7 +5,8 @@ Maintainer: Debian Med Packaging Team <[email protected]. Uploaders: Steffen Moeller <[email protected]>, Debian Nim Team <[email protected]> Build-Depends: debhelper-compat (= 13), - nim + nim, + libhts-dev Standards-Version: 4.5.0 Homepage: https://github.com/brentp/hts-nim Vcs-Browser: https://salsa.debian.org/med-team/nim-hts @@ -14,7 +15,8 @@ Rules-Requires-Root: no Package: nim-hts-dev Architecture: all -Depends: ${misc:Depends}, nim, nim-unicodedb-dev, nim-unicodeplus-dev +Depends: ${misc:Depends}, nim +Recommends: libhts3 Description: wrapper for hts C library The hts library is well accepted for the handling of millions of DNA sequences from what once was the high-throughput sequencing machines ===================================== debian/patches/dontDoNestedTests.patch ===================================== @@ -0,0 +1,8 @@ +Index: nim-hts/tests/all.nim +=================================================================== +--- nim-hts.orig/tests/all.nim ++++ nim-hts/tests/all.nim +@@ -1,2 +1,2 @@ + {. warning[UnusedImport]:off .} +-import flagtest, cigartest, htstest, bgzftest, faitest, auxtest, vcftest, bamtest, statstests, vcfiso, test_files, test_readme ++import flagtest, cigartest, htstest, bgzftest, faitest, auxtest, vcftest, bamtest, statstests, vcfiso, test_files ===================================== debian/patches/series ===================================== @@ -0,0 +1 @@ +dontDoNestedTests.patch ===================================== debian/rules ===================================== @@ -17,7 +17,7 @@ override_dh_auto_test: #tests/bamtest #nim c tests/bgzftest.nim #tests/bgzftest - nim c tests/all.nim + nim c --nimcache:$(CURDIR)/tests/nimcache tests/all.nim tests/all @@ -25,6 +25,6 @@ override_dh_auto_clean: dh_auto_clean # remnants from testing rm -f ____t.vcf t.gz ti.txt.gz ti.txt.gz.csi - rm -f tests/run tests/HG02002.bam.csi tests/auxtest tests/newsample.vcf tests/outmissing.vcf tests/outv.vcf tests/outz.vcf tests/sample.fa.fai - + rm -f tests/run tests/HG02002.bam.csi tests/auxtest tests/newsample.vcf tests/outmissing.vcf tests/outv.vcf tests/outz.vcf tests/sample.fa.fai tests/all tests/htstest tests/bgzftest tests/bamtest + rm -rf tests/nimcache View it on GitLab: https://salsa.debian.org/med-team/nim-hts/-/commit/2850046bf259eb0f44931d044583d4cbb4f5a32a -- View it on GitLab: https://salsa.debian.org/med-team/nim-hts/-/commit/2850046bf259eb0f44931d044583d4cbb4f5a32a You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
