Nilesh Patra pushed to branch master at Debian Med / nim-hts
Commits:
cf687b6b by Nilesh Patra at 2020-11-01T12:44:28+05:30
Binary split to install testing data
- - - - -
3 changed files:
- debian/control
- + debian/nim-hts-examples.install
- debian/rules
Changes:
=====================================
debian/control
=====================================
@@ -20,7 +20,20 @@ Package: nim-hts-dev
Architecture: all
Depends: ${misc:Depends}, nim
Recommends: libhts3
+Suggests: nim-hts-examples
Description: wrapper for hts C library
The hts library is well accepted for the handling of millions of
DNA sequences from what once was the high-throughput sequencing machines
in biological research and medical diagnostics/therapy control.
+
+Package: nim-hts-examples
+Architecture: all
+Depends: ${misc:Depends}
+Enhances: nim-hts-dev
+Description: examples for nim-hts: wrapper for hts C library
+ The hts library is well accepted for the handling of millions of
+ DNA sequences from what once was the high-throughput sequencing machines
+ in biological research and medical diagnostics/therapy control.
+ .
+ This package contains a test data set as well as sample scripts
+ running some test suite provided by Debian also as autopkgtest.
=====================================
debian/nim-hts-examples.install
=====================================
@@ -0,0 +1,10 @@
+tests/*.nim usr/share/doc/hts-nim-examples
+tests/*.sam usr/share/doc/hts-nim-examples
+tests/test_files usr/share/doc/hts-nim-examples
+tests/*.vcf usr/share/doc/hts-nim-examples
+tests/*.bcf usr/share/doc/hts-nim-examples
+tests/*.bam* usr/share/doc/hts-nim-examples
+tests/*.fa* usr/share/doc/hts-nim-examples
+debian/missing-sources/* usr/share/doc/hts-nim-examples
+debian/tests/run-unit-test usr/share/doc/hts-nim-examples
+debian/tests/*.nim usr/share/doc/hts-nim-examples
=====================================
debian/rules
=====================================
@@ -27,11 +27,9 @@ override_dh_auto_test:
nim c --nimcache:$(CURDIR)/tests/nimcache tests/all.nim
tests/all
-
override_dh_auto_clean:
dh_auto_clean
# remnants from testing
rm -f ____t.vcf t.gz ti.txt.gz ti.txt.gz.csi
rm -f tests/run tests/HG02002.bam.csi tests/auxtest tests/newsample.vcf
tests/outmissing.vcf tests/outv.vcf tests/outz.vcf tests/sample.fa.fai
tests/all tests/htstest tests/bgzftest tests/bamtest
rm -rf tests/nimcache
-
View it on GitLab:
https://salsa.debian.org/med-team/nim-hts/-/commit/cf687b6b29a9546e41570b6f1bec808b36e333da
--
View it on GitLab:
https://salsa.debian.org/med-team/nim-hts/-/commit/cf687b6b29a9546e41570b6f1bec808b36e333da
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