Andreas Tille pushed to branch upstream at Debian Med / cyvcf2
Commits:
48be2431 by Andreas Tille at 2021-01-17T09:49:12+01:00
New upstream version 0.30.4
- - - - -
3 changed files:
- .github/workflows/wheels.yml
- README.md
- cyvcf2/__init__.py
Changes:
=====================================
.github/workflows/wheels.yml
=====================================
@@ -54,3 +54,37 @@ jobs:
- uses: actions/upload-artifact@v2
with:
path: ./wheelhouse/*.whl
+
+ build_sdist:
+ name: Build source distribution
+ runs-on: ubuntu-latest
+ steps:
+ - uses: actions/checkout@v2
+
+ - uses: actions/setup-python@v2
+ name: Install Python
+ with:
+ python-version: "3.7"
+
+ - name: Build sdist
+ run: python setup.py sdist
+
+ - uses: actions/upload-artifact@v2
+ with:
+ path: dist/*.tar.gz
+
+ upload_pypi:
+ needs: [build_wheels, build_sdist]
+ runs-on: ubuntu-latest
+ # upload to PyPI on every tag starting with 'v'
+ if: github.event_name == 'push' && startsWith(github.event.ref,
'refs/tags/v')
+ steps:
+ - uses: actions/download-artifact@v2
+ with:
+ name: artifact
+ path: dist
+
+ - uses: pypa/gh-action-pypi-publish@master
+ with:
+ user: __token__
+ password: ${{ secrets.PYPI_API_TOKEN }}
=====================================
README.md
=====================================
@@ -13,7 +13,8 @@ If you use cyvcf2, please cite the
[paper](https://academic.oup.com/bioinformati
Fast python **(2 and 3)** parsing of VCF and BCF including region-queries.
-[](https://travis-ci.com/brentp/cyvcf2)
+
+[](https://github.com/brentp/cyvcf2/actions?query=workflow%3ABuild)
cyvcf2 is a cython wrapper around [htslib](https://github.com/samtools/htslib)
built for fast parsing of [Variant Call
Format](https://en.m.wikipedia.org/wiki/Variant_Call_Format) (VCF) files.
=====================================
cyvcf2/__init__.py
=====================================
@@ -2,4 +2,4 @@ from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased,
par_relatedness,
par_het)
Reader = VCFReader = VCF
-__version__ = "0.30.2"
+__version__ = "0.30.4"
View it on GitLab:
https://salsa.debian.org/med-team/cyvcf2/-/commit/48be2431c2df6cb6d111f1d14b4fafa67d135450
--
View it on GitLab:
https://salsa.debian.org/med-team/cyvcf2/-/commit/48be2431c2df6cb6d111f1d14b4fafa67d135450
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