Robbi Nespu pushed to branch master at Debian Med / scanpy
Commits:
6452c527 by Robbi Nespu at 2021-03-24T04:13:17+08:00
add pytest and pytest-cov to let the test running
- - - - -
2 changed files:
- debian/control
- debian/rules
Changes:
=====================================
debian/control
=====================================
@@ -30,7 +30,9 @@ Build-Depends: debhelper-compat (= 13),
python3-sinfo,
python3-setuptools-scm,
python3-legacy-api-wrap,
- python3-pytoml
+ python3-pytoml,
+ python3-pytest <!nocheck>,
+ python3-pytest-cov <!nocheck>
Standards-Version: 4.5.1
Homepage: https://github.com/theislab/scanpy
Vcs-Browser: https://salsa.debian.org/med-team/scanpy
=====================================
debian/rules
=====================================
@@ -3,14 +3,22 @@
export DH_VERBOSE = 1
export PYBUILD_NAME=scanpy
-export PYBUILD_BEFORE_TEST=cp -av pyproject.toml {build_dir}; cp -av
$(PYBUILD_NAME)/tests {build_dir}/$(PYBUILD_NAME)
-export PYBUILD_AFTER_TEST=rm -rf {build_dir}/pyproject.toml
{build_dir}/$(PYBUILD_NAME)/tests
+
+export PYBUILD_TEST_ARGS=-v
+#export PYBUILD_BEFORE_TEST=cp -av pyproject.toml {build_dir}; cp -a
$(PYBUILD_NAME)/tests {build_dir}/$(PYBUILD_NAME)
+#export PYBUILD_AFTER_TEST=rm -rf {build_dir}/pyproject.toml
{build_dir}/$(PYBUILD_NAME)/tests
%:
dh $@ --with python3 --buildsystem=pybuild
override_dh_auto_clean:
- ${RM} -rf .pybuild
+# dh_auto_clean
+ ${RM} -rf .pybuild __pycache__ scanpy/tests/__pycache__
scanpy/__pycache__
+
+override_dh_auto_test:
+ PYBUILD_SYSTEM=custom \
+ PYBUILD_TEST_ARGS="pytest-3 -rx --ignore=scanpy/tests/_images
-cov=scanpy --cov=tests --cov=docs_src --cov-report=term-missing:skip-covered
-o console_output_style=progress" \
+ dh_auto_test
# If you need to rebuild the Sphinx documentation
# Add sphinxdoc to the dh --with line
View it on GitLab:
https://salsa.debian.org/med-team/scanpy/-/commit/6452c527b347ff439e03545e967fd06e7a51aa67
--
View it on GitLab:
https://salsa.debian.org/med-team/scanpy/-/commit/6452c527b347ff439e03545e967fd06e7a51aa67
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