Hi, I would like to have some clarification, what exactly is packaged in the pkg-bioc group. At LinuxTage Chemnitz I've got some interesting hint to BioConductor and I have seen that there is a really interesting collection of R packages at
http://www.bioconductor.org/packages/release/bioc/ I know that there is an Alioth project concerning packaging of BioConductor at http://alioth.debian.org/projects/pkg-bioc/ but in SVN http://svn.debian.org/wsvn/pkg-bioc/trunk/packages/?rev=0&sc=0 I can only see a package of r-cran-qtl - which is actually not at BioConductor page (or at least I did not found it there). If I try to follow the advise how to obtain BioConductor packages given at http://wiki.debian.org/AliothPkgBioc and just try sh ./r_pkg_prepare.sh --create-all --eu I get a file autogenerate-variable.out and when I continue with $ ./r_pkg_update.pl --doupdate --dobuilderupdate Can't locate Graph/Directed.pm in @INC (@INC contains: /etc/perl /usr/local/lib/perl/5.10.0 /usr/local/share/perl/5.10.0 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl . /usr/share/R/share/perl ../tools-ng) at debtag.pm line 140. BEGIN failed--compilation aborted at debtag.pm line 140. Compilation failed in require at ./r_pkg_update.pl line 161. BEGIN failed--compilation aborted at ./r_pkg_update.pl line 161. so I guess something is wrong. My suspicion is that this stuf was not touched for a while because the scripts contain a version string "2.1" for BioConductor and upstream mentions 2.3 as stable and 2.4 as devel. So could you please give a short summary about the current status of this BioConductor stuff here on the list to perhaps coordinate things to some extend? Thank you very much for your effort so far Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org