Hi, this is indeed a bug. It is no blocking but I will give a patch new week. We will remove it from shell script I think to create the pid file directly in the program using conf data. This pid file is just used to prevent dual updates on same banks.
Would you mind create a bug under biomaj package for this (reportbug)? (I have intermittent access to internet this week). If you can't i will create it next week Thanks Olivier Helo, I installed and tried Biomaj, thanks for your job Olivier, No problem during install and running th e sample alu db. But, I got an minor error /usr/share/biomaj/bin/biomaj.sh: line 103: / usr/share/biomaj/tmp / .bmajpid_alu: Aucun fichier ou dossier de ce type (for no french speaker => means no found or directory found) In fact /usr/share/biomaj/tmp doesn't exist, and I think is ok with the debian policy. The code in biomaj.sh is : echo $$>$BIOMAJ_ROOT/tmp/.bmajpid_$arg with $BIOMAJ_ROOT = /usr/share/biomaj There is a tmp directory for biomaj (tmp.dir in /etc/biomaj/general.conf) but it's use by the java code not the shell script starting biomaj. I think that the pid file should go to /var/lib/biomaj/tmp or /var/run/biomaj or either /tmp /var/lib/biomaj/tmp is created by the package so it can be use, even if you change the location in general.conf (like I did, to put databases on another partition). But, I don't know the solution to correct this error. Thanks again for the packaging. Best regard, Anthony. -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/4dad7340.4010...@gmail.com
