Hi all, The libsbml5 is already in testing. But copasi 4.8.35 (the newest version) needs still libsbml4. Both can be installed on one machine well (except the *dev packages). I prepared a package for libsbml4, but I'm not shure, how to handle it - should I file an ITP bug for libsbml4, too? Anyway, its located in the svn in packages/libsbml/branches/libsbml4. It's the right place? But another (more critical) problem is pbuilder - I can't build libsbml4 with pdebuild; configure works, but then I get strange errors at the begin of make: _____________________________________________________________________________
# Add here commands to compile the package. /usr/bin/make make[1]: Entering directory `/tmp/buildd/libsbml-4.3.1' /usr/bin/make -C src -w --jobserver-fds=3,5 -j include /usr/bin/make -C docs -w --jobserver-fds=3,5 -j include /usr/bin/make -C win -w --jobserver-fds=3,5 -j include /usr/bin/make -C macosx -w --jobserver-fds=3,5 -j include make[2]: Entering directory `/tmp/buildd/libsbml-4.3.1/win' make[2]: Nothing to be done for `include'. make[2]: Leaving directory `/tmp/buildd/libsbml-4.3.1/win' /usr/bin/make -C src -w --jobserver-fds=3,5 -j make[2]: Entering directory `/tmp/buildd/libsbml-4.3.1/docs' make[2]: Nothing to be done for `include'. make[2]: Leaving directory `/tmp/buildd/libsbml-4.3.1/docs' /usr/bin/make -C docs -w --jobserver-fds=3,5 -j [...] make[3]: Entering directory `/tmp/buildd/libsbml-4.3.1/src/common' mkdir -p -- /tmp/buildd/libsbml-4.3.1/include/sbml/common Copying /tmp/buildd/libsbml-4.3.1/include/sbml/common/extern.h Copying /tmp/buildd/libsbml-4.3.1/include/sbml/common/common.h make[3]: Entering directory `/tmp/buildd/libsbml-4.3.1/src/common' /tmp/buildd/libsbml-4.3.1/doltlibtool --mode=compile --tag=CXX g++ -I. -I/tmp/buildd/libsbml-4.3.1/include -DLINUX -MT libsbml-version.lo -MD -MP -MF ".deps/libsbml-version.Po" -c -o libsbml-version.lo libsbml-version.cpp make[3]: Entering directory `/tmp/buildd/libsbml-4.3.1/src/util' /tmp/buildd/libsbml-4.3.1/doltlibtool --mode=compile --tag=CXX g++ -I. -I/tmp/buildd/libsbml-4.3.1/include -DLINUX -DPACKAGE_NAME=\"libSBML\" -MT List.lo -MD -MP -MF ".deps/List.Po" -c -o List.lo List.cpp /usr/bin/make -C util -w --jobserver-fds=3,5 - --jobserver-fds=3,5 -j include In file included from libsbml-version.h:35:0, from libsbml-version.cpp:32: /tmp/buildd/libsbml-4.3.1/include/sbml/common/extern.h:34:43: fatal error: sbml/common/libsbml-namespace.h: No such file or directory compilation terminated. _________________________________________________________________________________ and it breaks. with debuild i get: _________________________________________________________________________________ # Add here commands to compile the package. /usr/bin/make make[1]: Entering directory `/local/home/ivo/src/alioth/packages/libsbml/build-area/libsbml-4.3.1' /usr/bin/make -C src -w include make[2]: Entering directory `/local/home/ivo/src/alioth/packages/libsbml/build-area/libsbml-4.3.1/src' /usr/bin/make -C common -w include make[3]: Entering directory `/local/home/ivo/src/alioth/packages/libsbml/build-area/libsbml-4.3.1/src/common' mkdir -p -- /local/home/ivo/src/alioth/packages/libsbml/build-area/libsbml-4.3.1/include/sbml/common Copying /local/home/ivo/src/alioth/packages/libsbml/build-area/libsbml-4.3.1/include/sbml/common/common.h Copying /local/home/ivo/src/alioth/packages/libsbml/build-area/libsbml-4.3.1/include/sbml/common/extern.h Copying /local/home/ivo/src/alioth/packages/libsbml/build-area/libsbml-4.3.1/include/sbml/common/libsbml-config.h Copying /local/home/ivo/src/alioth/packages/libsbml/build-area/libsbml-4.3.1/include/sbml/common/libsbml-config-unix.h Copying /local/home/ivo/src/alioth/packages/libsbml/build-area/libsbml-4.3.1/include/sbml/common/libsbml-config-win.h Copying /local/home/ivo/src/alioth/packages/libsbml/build-area/libsbml-4.3.1/include/sbml/common/libsbml-namespace.h Copying /local/home/ivo/src/alioth/packages/libsbml/build-area/libsbml-4.3.1/include/sbml/common/libsbml-version.h Copying /local/home/ivo/src/alioth/packages/libsbml/build-area/libsbml-4.3.1/include/sbml/common/operationReturnValues.h [...] _________________________________________________________________________________ and it works. I don't think, that I forgot some build dependencies, and the error doesn't point in that direction. It seems, that not all files are copied to the right directory, bu I have no idea at all, why "make" has a different behavior... Is this an absolutely no-go, or would it be sufficient, if it builds with debuild? Ivo -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20120131151240.36ada...@orm.biologie.hu-berlin.de
