Hi Michał, thanks for your very quick reply. I'm perfectly fine with your schedule.
Thanks for your cooperation Andreas. On Sat, Nov 21, 2015 at 08:10:58PM +0100, Michał Woźniak wrote: > Hi Andreas, > I'm delighted to hear that! > > Thanks for all the comments too, here are my short answers: > > 0. sure I will change the approach > 1. The intended license is GPL v3. If there is no explicite statement > I will add it as part of point 2. > 2. I will put some effort in the next couple of days and will try to > fix the build quickly both on Python 2 and 3. > 3. I will investigate the possible approaches and will do it better > 4. I will investigate this as part of point point 2. > > I estimate this will take me about a week or two is that fine? > > Best wishes, > Michal > > 2015-11-21 18:53 GMT+01:00 Andreas Tille <andr...@an3as.eu>: > > Hello, > > > > I'm writing you on behalf of the Debian Med team that has the objective > > to package all free software that is relevant in Biology and Medicine > > for official Debian. > > > > I came across GWAMAR[1] and started the packaging in Debian Git[2]. > > When doing so I stumbled upons some issues in the download archive[3]: > > > > 0. Just a comment: It would be more convenient to find versioned > > download archives rather than versioned directories. The > > rationale behind this is that you have files with the same name > > but different content. > > > > 1. I did not found any explicite license statement neither at the > > website nor inside the code. Could you be so kind to clarify > > this? > > > > 2. At Bitbucket[4] you write: > > This software is written in Python, thus Python 2 or 3 is > > required to run GWAMAR. > > When trying to build with Python3 I've git some errors > > (basically in print statements with Python2 syntax. Please > > let me know if you are interested in patches fixing this. > > > > 3. I noticed that the default config file in the download archive > > contains several private PATH settings. I patched these to > > the Debian locations in the packaging git[5]. It would be > > great if you could change the default config file to a more > > neutral setting. > > > > 4. Finally I endet up by an error message > > > > File "a1_save_details_scores_all.py", line 161, in <module> > > input_fh = open(input_fn) > > IOError: [Errno 2] No such file or directory: > > 'datasets/mtu173/exP//res_profiles.txt' > > > > I have no idea how to deal with this since this file is > > neither in the download tarball nor can I see it in the > > repository at Bitbucket. > > > > I hope you like the intend to package GWAMAR for Debian and can > > help with these issues. > > > > Kind regards > > > > Andreas. > > > > [1] http://bioputer.mimuw.edu.pl/gwamar/ > > [2] git://anonscm.debian.org/debian-med/gwamar.git > > [3] http://bioputer.mimuw.edu.pl/gwamar/software/gwamar_v1.14/gwamar.zip > > [4] https://bitbucket.org/mimowo/gwamar > > [5] > > https://anonscm.debian.org/cgit/debian-med/gwamar.git/tree/debian/patches/adapt_debian_locations_of_binaries.patch > > > > -- > > http://fam-tille.de > -- http://fam-tille.de