Le Wed, Dec 23, 2015 at 08:01:07PM -0800, Afif Elghraoui a écrit : > > lofreq requires at least samtools 1.1. I did try using the libbam-dev > package for this, but it wasn't compatible. > > In any case, I think there is a similar situation with pysam and the > samtools R-bindings, but that they just distribute code copies.
Hi Afif, how about asking to the lofreq authors if they can use the htslib directly instead of libbam ? If not, it should be easy to add a samtools-dev package as you proposed. Cheers, -- Charles