Hello Andreas! Sorry for the delay, but it seems like I struggle with the setup and I can't resolve it by myself.
Thanks for the advice about building packages -- configuring pdebuild really helped and I build all the mentioned packages by editing debian/gbp.conf as Debian Med Policy document recommends. I read carefully the CI documentation <https://ci.debian.net/doc/file.MAINTAINERS.html> and followed all the steps (I chose lxc backend. I created /etc/sudoers.d/lxc file as described and ran debci setup), but I'm still not able to run tests. Here is the executed command: anna@debian:~/projects/aegean$ adt-run --user debci --output-dir /tmp/output-dir/ ./aegean_0.15.1+dfsg-3_amd64.changes --- lxc --sudo adt-sid-amd64 I got the following error: "Error: container adt-sid-amd64 is not defined" This <https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=799760> discussion looks relevant, but the executed command here is slightly different. Do you have any ideas how to fix this issue? What am I doing wrong? I'll keep in mind that the next package after bwa is prodigal, but I guess I'll have more questions about the first one and the process as a whole. The acquaintance stage is always time consuming Regards, Anna 2016-02-20 13:54 GMT+03:00 Andreas Tille <andr...@an3as.eu>: > Hi Anna, > > On Sat, Feb 20, 2016 at 11:36:05AM +0300, Anna Lioznova wrote: > > Hello, Andreas! > > > > I just wanted to give you a small update: I'm working on the task, but I > > have not finished it yet. > > Yesterday I installed Debian on my laptop (which was a bit tricky, but > > finally I managed), so I'm exploring it. > > > > gbp buildpackage > > doesn't work for me, but the manual > > <https://www.debian.org/doc/manuals/maint-guide/build.en.html> says to > use > > -uc -us options, which help > > I do not think that this is needed (I never use these uptions). You > might like to check again in Debian Med policy - perhaps by seeking for > the string gbp - specifically the paragraph > "To make gbp buildpackage build the package with pdebuild." > > > I'm in progress with reading about Debian CI. > > Thanks for the examples and for all the details -- I like learning this > way > > too. I'm in progress with tests also. > > > > Thanks again for such a detailed letter and for your time, that's very > > helpful! The plan looks clear and I don't have any questions now. > > Sounds good. Just feel free to keep on asking if a question might arrise. > Chances are good that some other helpful member of the team might answer. > > I've found another candidate package lacking a test suite which you > might like to takle right after bwa. I just updated prodigal and in > preparation of your work moved the packaging from SVN to Git. The doc > contains the hint: > > prodigal -i my.genome.fna -o my.genes -a my.proteins.faa > prodigal -i my.metagenome.fna -o my.genes -a my.proteins.faa -p meta > > So your task would be to find such my.* files, provide these for the > package and run the commands as a test suite. > > > I hope to cope with this task in a couple of days (I don't have that much > > spare time because of work and classes) > > That's fine. Just make sure your classes have preference over this GSoC > project. From my point of view the advantage of this specific project > over others I was working in as a mentor is that you have quite small > chunks of work which can be finished step by step. > > Kind regards > > Andreas. > > -- > http://fam-tille.de > >
