Hi Thank you for looking into this. Bio_assembly_refinement does not need to be a standalone package.
Nishadi On 08/03/2016 08:36, "Martin Hunt" <m...@sanger.ac.uk> wrote: >Hi, > > From a Circlator point of view, I think it would be good to eventually >have the relevant bits of bio_assembly_refinement put into Circlator. >Circlator only uses one piece of functionality from >bio_assembly_refinement. > >I don't know what else bio_assembly_refinement is being used for, so >can't comment on that as a stand-alone package. > >Best, >Martin > > >On 08/03/2016 07:21, Sascha Steinbiss wrote: >> Hi Afif, >> >> first of all thanks for looking at Circlator, which was on my list as >>well :) >> >>>> I'm looking into packaging Circlator, which depends on the Sanger >>>> program bio_assembly_refinement. Looking into it, I'm wondering >>>>whether >>>> this is a tool that will just get folded into circlator eventually. Do >>>> you think it's worth packaging it separately? >>> I should add that the alternative would be to bundle it into the >>> circlator package as a multi-orig tarball. The question is better >>> rephrased as whether it's worth packaging bio_assembly_refinement >>> /separately/. >> Yes, I noticed the dependency on bio_assembly_refinement as well and I >>was¹t sure what part of it is really needed, since it¹s description >>sounded a bit similar to Circlator itself. I didn¹t have the time yet to >>look into it in more detail yet. >> I have cc¹d Martin Hunt, the Circlator author, and Nishadi de Silva, >>the bio_assembly_refinement author, on this email and they might be able >>to say more. >> >> Many thanks, >> Sascha > > >-- >Dr. Martin Hunt >Senior Bioinformatician >Pathogen Informatics >Wellcome Trust Sanger Institute >Cambridge >UK > >Tel: +44 (0)1223 834244 > -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.
