Hello Andreas, I revert your changes due to new Autopkgtest on mummer and look tests but couldn't find what is wrong also there is no bug report on program.
Best Regards Canberk Koç [image: https://]about.me/canberkkoc <https://about.me/canberkkoc?promo=email_sig&utm_source=email_sig&utm_medium=email_sig&utm_campaign=external_links> 2016-07-25 10:12 GMT+03:00 Canberk Koç <canberk...@gmail.com>: > Hello Andreas,Sascha, > > Thanks for your help first of all. I can't look what you've changed in > mummer but i'll look it by tommorrow and i will give you more detailed > report. I am going on list also ;-) > > Best Regards > > > > Canberk Koç > [image: https://]about.me/canberkkoc > > <https://about.me/canberkkoc?promo=email_sig&utm_source=email_sig&utm_medium=email_sig&utm_campaign=external_links> > > 2016-07-25 10:07 GMT+03:00 Andreas Tille <andr...@an3as.eu>: > >> Hi Canberk, >> >> On Sun, Jul 24, 2016 at 08:13:16AM +0200, Andreas Tille wrote: >> > > I commit Gdpc to Git here is the problem unit test codes(all of em) >> from >> > > Readme file and gives segmentation fault for this issue. >> > >> > I think this is a severe bug in the package. Would you please use >> > >> > reportbug >> > >> > to report the issue. Do you feel able to track down the issue? May be >> > some debugging of the source code will shade some light. >> >> I think this is solved by Sascha's patch and I uploaded the package >> without an actual autopkgtest but leaving your script for manual testing >> for the users. >> >> > > Second issue Mummer features mummerplot and run-mummer1 has some >> faults >> > > mummerplots have a lot of faulty lines i can't manage to solve them >> > > run-mummer1 also have some problem about tail command neither i can't >> > > manage to solve it. But i command line these tests and take pass >> result. >> > >> > Hmmmm, I fixed the line that is uncompressing the data files and now the >> > test script seems to pass. What exactly do you think is wrong? >> >> Could you please explain what exactly is wrong with the mummer test >> after I fixed the compression of the test data? I'd recommend to always >> use the `find ...` command since it safely unpacks all gzipped files. >> >> > gdpc >> >> Uploaded. >> >> > mummer (I'll convert this to Git as well) >> >> Please explain more verbosely what might be wrong. >> >> Further todo suggestions: >> >> fastqc >> kalign >> >> > I'll convert kalign to Git. >> >> Done >> >> probcons >> >> Kind regards >> >> Andreas. >> >> >> -- >> http://fam-tille.de >> >> >
