2017-10-12 10:59 GMT+03:00 Olivier Sallou <olivier.sal...@irisa.fr>:
>
>
> On 10/11/2017 05:26 PM, Michael Crusoe wrote:
>
> Hello,
>
> A quick internet search failed me, so my apologies if the answer to this
> is well known.
>
> Is there a service that automatically builds software containers for each
> Debian Med application* package?
>
> As discussed at this week's biocontainers workshop, while they themselves
> won't be building containers for non-bioconda packages, they are happy to
> list container images built by other communities.
>
> So wherever we have a Debian package for a bio/med app that isn't in
> bioconda, it would be nice to auto create a Docker/Singularity container
> for inclusion in the biocontainers.pro registry. Since the container
> build process would be mostly just `apt install ${package}` (and thus
> fairly quick) we can leverage existing free services to keep these up to
> date.
>
> Hi Mickael,
> with the new continuous integration I gonna implement in biocontainers, I
> will inject all debianmed "binary" packages that do not have a bioconda
> equivalent (request from biocontainers team) and thus create
> docker/singularity containers at regular interval, based of course on a
> Debian container image.
>
Thank you Olivier for the welcome news. Please let me know how I can assist.
> But those will not be *official* debian containers, just an initiative to
> make them available.
>
*nod*
>
>
>
>
> *Non-library, non-dev, non-service. Basically the command line tools used
> by researchers to perform data analysis and transformation.
>
>
> --
> Olivier Sallou
> IRISA / University of Rennes 1
> Campus de Beaulieu, 35000 RENNES - FRANCE
> Tel: 02.99.84.71.95
>
> gpg key id: 4096R/326D8438 (keyring.debian.org)
> Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
>
>
>
--
Michael R. Crusoe
Co-founder & Lead,
Common Workflow Language project <http://www.commonwl.org/>
https://impactstory.org/u/0000-0002-2961-9670
m...@commonwl.org
+1 480 627 9108
