Hey,
This is super awesome to see Andreas & Steffen, you really made my day!
A few notes:
* Would you please add a dot to Bio.Tools? Or Bio.tools, whichever you
like more.
* The coloured backgrounds don't work in Firefox, but that's no problem
at all.
* I really like the coloured backgrounds otherwise (yeah!), but even
more transparency would look much better to me.
* The texts "Registry entries:" | "Biotools" | "RRID" | "OMICtools" are
in italics in some browsers and regular in others. To me, the "Registry
entries:" looks better in italics (to distinguish from the rest), and
the registry links look much better in regular (especially when with the
coloured backgrounds because those are rectangular).
* RRID|SciCrunch: identifiers.org don't guarantee anything. If there's
no cool permanent URL, identifiers.org don't have it either. That's
exactly the case here. Unless they really have some temporary
server-side problems exactly now. DuckDuckGo doesn't help either.
(Unlike with OMICtools, there it works awesomely!!) The only usable link
I found for RRID|SciCrunch is
https://scicrunch.org/scicrunch/data/source/nlx_144509-1/search?q=SCR_010709
i.e. prefix
"https://scicrunch.org/scicrunch/data/source/nlx_144509-1/search?q=".
Unfortunately I haven't found a way to get the first hit directly. And
the RRID link is dead just like the identifiers.org link. And sorry for
a dumb question, are there any non-SciCrunch RRIDs, or should they all
have a record in the SciCrunch registry?
What do you think?
Thanks^6!
Matus
On 2017-10-19 13:33, Andreas Tille wrote:
Hi,
I've posted a set of questions today to this list and they are
remaining
**open**. So those who feel able to answer the questions please check
out this thread.
Despite the open questions I tried an example implementation:
https://blends.debian.org/med/tasks/bio
To mark different repositories visibly I went to their homepage and
picked the "main color" there to use it as background for the according
link (but used transparency level 75% to make the page not to
varicoloured.
I did **not** implemented the 'NA' feature suggested by Steffen since I
was not convinced that users will really follow any link to do
something
- my experience to provide screenshots, debtags and translations is
quite bad (BTW, have you provided any screenshot today?)
Please test, comment and find bugs in the implementation - and answer
the open questions in this thread.
Kind regards
Andreas.
On Mon, Oct 09, 2017 at 04:10:59PM +0200, Steffen Möller wrote:
Hi Andreas,
here some R/Python/PHP-mix pseudocode idea for getting
the registry links displayed on the task page:
registry_prefix={
"bio.tools"=>"https://bio.tools/",
"RRID" => "http://identifiers.org/rrid/RRID:",
"SciCrunch" => "http://identifiers.org/rrid/RRID:",
"OMICtools" => "https://duckduckgo.com/?q=\\" (a single backslash at
the end is what I want)
}
print "Registries: "
for (registry_name,registry_id) %in% registry_assignments {
prefix=registry_prefix[[registry_name]]
if (empty(prefix) or "NA"==registry_id) {
print "%s:%s" % ($registry_name,$registry_id)
} else {
print "%s:<a href="%s%s">%s</a>" %
(registry_name,prefix,registry_id,registry_id)
}
}
The situation with OMICtools is not yet ideal, but from what
I understood this will soon get better. The single backslash
at the end induces some "You feel lucky!"-like immediate
forward to the top hit. Funnily enough, SciCrunch also needs
a bit of bridge, albeit a more deterministic one.
Best,
Steffen
--
http://fam-tille.de