Hi, Andreas On July 19, 2018 5:36:15 AM EDT, Andreas Tille <andr...@an3as.eu> wrote: >Hi Afif, > >in my attempt to fix Vcs-fields and other issues in packages that were >not uploaded a long time I stumbled upon pbdagcon[1]. In my latest >commit[2] I managed to convert d/watch to git mode. However, git mode >does not support submodules and thus the dirs DALIGNER and DAZZ_DB are >not included into the fetched upstream source tarball. This could mean >we need to keep the get-orig-source script. > >However, I've checked these submodules[3] and realised that these are >outdated versions of the packaged code inside daligner and dazzdb[4]. >The upstream author just moved to a different repository and has left >[3] alone which means pbdagcon is using outdated code. Is there any >good reason to keep this situation (like incompatibilities with new >code >etc.)? >
One of pbdagcon's binaries (dazcon) needs that code to build. Anyway, the included daligner/dazzdb code [3] was modified from the original [4] and is not just an exact copy of an older verion. regards Afif > >[1] https://salsa.debian.org/med-team/pbdagcon >[2] >https://salsa.debian.org/med-team/pbdagcon/commit/439fc65a84f142570223a477914d403ece9f2354 >[3] https://github.com/PacificBiosciences/DALIGNER > https://github.com/PacificBiosciences/DAZZ_DB >[4] https://github.com/thegenemyers/DALIGNER > https://github.com/thegenemyers/DAZZ_DB > >-- >http://fam-tille.de
