Package: release.debian.org Severity: normal User: release.debian....@packages.debian.org Usertags: unblock X-Debbugs-CC: debian-med@lists.debian.org
This upload fixes bug #925568 about build reproducibility (failing). It simply add a small patch to fix the issue adds a metadata entry. Waiting for a *go* to upload package to unstable. Thanks Olivier debdiff result => debian@ccf6b68dd723:/opt/debian/build-area$ debdiff cnvkit_0.9.5-2.dsc cnvkit_0.9.5-3.dsc dpkg-source: warning: extracting unsigned source package (/opt/debian/build-area/cnvkit_0.9.5-3.dsc) diff -Nru cnvkit-0.9.5/debian/changelog cnvkit-0.9.5/debian/changelog --- cnvkit-0.9.5/debian/changelog 2019-01-06 12:12:46.000000000 +0000 +++ cnvkit-0.9.5/debian/changelog 2019-03-27 08:00:39.000000000 +0000 @@ -1,3 +1,10 @@ +cnvkit (0.9.5-3) unstable; urgency=medium + + * Fix buster rebuilds (Closes: #925568) + d/patches/controldir.patch + + -- Olivier Sallou <osal...@debian.org> Wed, 27 Mar 2019 08:00:39 +0000 + cnvkit (0.9.5-2) unstable; urgency=medium [ Jelmer Vernooij ] diff -Nru cnvkit-0.9.5/debian/patches/controldir cnvkit-0.9.5/debian/patches/controldir --- cnvkit-0.9.5/debian/patches/controldir 1970-01-01 00:00:00.000000000 +0000 +++ cnvkit-0.9.5/debian/patches/controldir 2019-03-27 08:00:39.000000000 +0000 @@ -0,0 +1,21 @@ +Subject: do not create dir if it exists +Description: command tries to create an output dir during tests, even if it + already exists, raising an error. Skip creation if already present +Author: Olivier Sallou <osal...@debian.org> +Bug: 925568 +Forwaded: no +Last-Updated: 2019-03-27 +--- a/cnvlib/commands.py ++++ b/cnvlib/commands.py +@@ -1365,8 +1365,9 @@ + 'anti' if 'antitarget' in fname else '')) + if args.output_dir: + if not os.path.isdir(args.output_dir): +- os.mkdir(args.output_dir) +- logging.info("Created directory %s", args.output_dir) ++ if not os.path.exists(args.output_dir): ++ os.mkdir(args.output_dir) ++ logging.info("Created directory %s", args.output_dir) + outfname = os.path.join(args.output_dir, outfname) + tabio.write(garr, outfname) + diff -Nru cnvkit-0.9.5/debian/patches/series cnvkit-0.9.5/debian/patches/series --- cnvkit-0.9.5/debian/patches/series 2019-01-06 09:41:24.000000000 +0000 +++ cnvkit-0.9.5/debian/patches/series 2019-03-27 08:00:39.000000000 +0000 @@ -1,3 +1,4 @@ no-py-ext python3compat.patch spelling +controldir diff -Nru cnvkit-0.9.5/debian/upstream/metadata cnvkit-0.9.5/debian/upstream/metadata --- cnvkit-0.9.5/debian/upstream/metadata 2018-06-19 21:48:37.000000000 +0000 +++ cnvkit-0.9.5/debian/upstream/metadata 2019-03-27 08:00:39.000000000 +0000 @@ -19,6 +19,6 @@ - Name: OMICtools Entry: OMICS_11538 - Name: bio.tools - Entry: NA - - Name: bio.tools + Entry: cnvkit + - Name: SciCrunch Entry: NA -- gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438