Hello, The nextflow folks have recently published a preprint on their nf-core (https://nf-co.re/) effort to host routine workflows in bioinformatics. Reserachgate kindly pointed me to it: https://github.com/nf-core/rnaseq/blob/master/environment.yml
I had a random pick on https://github.com/nf-core/rnaseq/blob/master/environment.yml to learn about requirements of their rnaseq workflow. Very close we are -the effort we keep investing into getting bcbio completely functional helped here. But a few are still missing: bioconductor-dupradar https://bioconductor.org/packages/release/bioc/html/dupRadar.html csvtk https://github.com/shenwei356/csvtk preseq http://smithlabresearch.org/software/preseq/ rseqc http://rseqc.sourceforge.net/ deeptools https://github.com/deeptools/deepTools and others like multiqc gffread are already in the making. I admit not to know about how to best invest our resources here. But if there are readers of this list who use nextflow already - please speak and sync up - with us and them. Best, Steffen