On Tue, 2020-09-15 at 10:44 +0200, Andreas Tille wrote: > On Tue, Sep 15, 2020 at 10:09:10AM +0200, olivier sallou wrote: > > On Sun, 2020-09-13 at 21:37 +0200, Pierre Gruet wrote: > > > - the test > > > htsjdk.samtools.SAMSequenceDictionaryTest.testMergeDictionaries[7 > > > ] > > > outputs an error, but it's OK because it is expected to raise an > > > Exception; > > > > > > - the test > > > htsjdk.samtools.CRAMReferencelessTest.testReadCRAMWithEmbeddedRef > > > eren > > > ce > > > outputs several messages like > > > > > > Ignoring SAM validation error: > > > ERROR::INVALID_ALIGNMENT_START:Read > > > > this test and the other one shows "Ignoring SAM validation error" > > so I > > guess it is ok.... > > But the exit code is "fail" anyway. What exactly is your suggestion > to > do? I just made a try to build based on latest code in git, and it worked for me...
Olivier > > Kind regards > > Andreas. > -- Olivier Sallou Univ Rennes, Inria, CNRS, IRISA Irisa, Campus de Beaulieu F-35042 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
