Hi Aaron, Am Wed, Aug 03, 2022 at 04:14:53PM -0400 schrieb Aaron M. Ucko: > >> --with-vdb=/usr VDB_INCLUDE=-I/usr/include/ncbi-vdb > > > > Hmmm, this was running into an error which I tried to fix with > > Do you happen to remember what the error was? It worked for me, albeit > in a rather non-minimal build environment.
Hmmmm, very strange. I "simply" pushed and wanted to show you in Salsa-CI to show you the problem ... but there is no such error as here: ... checking for Zorba... no checking for libsqlite3... no checking for ncbi-vdb in //usr... no configure: error: --with-vdb explicitly specified, but no usable version found. make[1]: *** [debian/rules:7: override_dh_auto_configure] Error 1 make[1]: Leaving directory '/build/ncbi-igblast-1.19.0' make: *** [debian/rules:4: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package In any case I think it makes sense to fix all those ... checking for libssl... no checking for krb5-config... no checking for libgssapi_krb5... no checking for libcurl... no checking for reentrant Sybase libraries... no checking for Sybase... no checking for FreeTDS... no checking for mysql_config... no checking for Berkeley DB libraries... no checking for python... no checking for python2.5... no checking for python2.6... no checking for python2.7... no checking for python3... no checking for perl... /usr/bin/perl checking for usable Perl libraries... no checking Boost version... checking for Boost library name tag... -gcc121-mt-d-x64- (autodetected) checking for Boost.Regex... no checking for Boost.Spirit... no checking for Boost.System... no checking for Boost.Chrono... no checking for Boost.Filesystem... no checking for Boost.Iostreams... no checking for Boost.Program-Options... no checking for Boost.Serialization... no checking for Boost.Test... no checking for Boost.Thread... no checking for the NCBI C toolkit... no ... "no"s by the according Build-Depends if we have the actual library (not sure yet what is checked by NCBI C toolkit but others are clear, thought. > > I've cleared most of the --without options and added --with-openmp with > > the according Build-Depends. > > Thanks! However, please note that OpenMP is a compiler feature and > doesn't require any special build dependencies; OpenMPI, meanwhile, is a > third-party library that doesn't come into play here. OK, I removed libopenmpi-dev from Build-Depends. Kind regards Andreas. -- http://fam-tille.de