Hi Nilesh, thanks a lot for having a look.
Am Thu, Nov 24, 2022 at 10:01:47AM +0530 schrieb Nilesh Patra: > On Wed, Nov 23, 2022 at 09:01:40PM +0100, Andreas Tille wrote: > > python-cobra > > It seems like that the interpreter is having trouble referencing the > name variable. I tried using getName instead of that which gets the > test passing but I'm not very sure if it serves the purpose well. > > Pushed this change to salsa, but please review. I've forwarded you change to upstream[1] to evaluate the change (which looks perfectly sensible to me). There is a remaining (and unrelated) autopkgtest error[2]: E ModuleNotFoundError: No module named '_libsbml' which is caused by the fact that python3-sbml5 can only deal with one Python3 version. Thus I will restrict the test to default Python3 and upload to unstable. > > python-pyani > > This is because python3-biopython does not vendor shared object libs > for python3.11 yet > > $ apt-file list python3-biopython | grep '_align' > ... > python3-biopython: > /usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-310-x86_64-linux-gnu.so > python3-biopython: > /usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-39-x86_64-linux-gnu.so > > There are two ways to fix this: > > 1. Run tests only for default python3-dev version > 2. Re-compile biopython to vendor 3.11 bindings, but this has issues > at present due to t-coffee bug. > > I have pushed something that implements 1.) to salsa, please check. Makes sense. I've added a FIXME to d/control which should create sufficient noise in the future to revert that change once it is not needed any more. Kind regards Andreas. [1] https://github.com/opencobra/cobrapy/issues/1302 [2] https://salsa.debian.org/med-team/python-cobra/-/jobs/3565917 -- http://fam-tille.de