Andreas Tille wrote: > RAMLIMIT is defined in src/config.h.in but for some reason not > propagated to src/config.h.
Yes, autoheader discards the whole file and generates a new template. You can add this snippet to configure.ac to be included verbatim: AH_TOP([ /* RAMLIMIT (in MB) defines how much memory we're * allowed to expend on alignment algorithms without * switching to more efficient memory forms - e.g. * in smallcyk.c */ #ifndef RAMLIMIT #define RAMLIMIT 0 #endif /* SRE_CONLEVEL will prob move to squid somewhere. * Set to 1 to activate contract checking, during debugging. */ #define SRE_CONLEVEL 1 #if (SRE_CONLEVEL >= 1) #include <assert.h> #endif #define CMSEQDBENV "BLASTDB" #define CMDBENV "RFAMDB" ])