On 2020-04-06, at 17:59:05 +0200, Andreas Tille wrote: > since I did not got any response from r-pkg team yet I guess nobody > has a clue about this autoconf issue. So I'd like to forward this > question here to finalise a package which is relevant for our COVID-19 > Biohackathon. > > I injected r-bioc-rgadem[1] but the build ends in: > > dh_autoreconf -O--buildsystem=R > autoheader: warning: missing template: HAVE_OPENMP > autoheader: Use AC_DEFINE([HAVE_OPENMP], [], [Description]) > autoreconf: /usr/bin/autoheader failed with exit status: 1 > dh_autoreconf: error: autoreconf -f -i returned exit code 1 > make: *** [debian/rules:4: binary] Error 25 > dpkg-buildpackage: error: debian/rules binary subprocess returned exit status > 2 > > > Any hint would be welcome
Similar to some of the problems with mpqc yesterday. Patch attached. J.
diff --git a/configure.ac b/configure.ac
index 0b7e8d793a31..aef047400685 100755
--- a/configure.ac
+++ b/configure.ac
@@ -39,6 +39,7 @@ Use --disable-parallel (or ARG=no) to keep the code sequential even if GCD or Op
# As recommended by Simon Urbanek on R-Devel
AC_DEFUN([AC_CHECK_PKG_OPENMP],
[dnl
+ AH_TEMPLATE([HAVE_OPENMP],[])
AC_MSG_CHECKING([whether OpenMP will work in a package])
ac_pkg_openmp=no
AS_IF(
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