Hi, I tried to get the dh_auto_test for python-biom-format[1] working but it seems my way to copy the test data to the right place is not doing the trick. There are always errors like
dh_auto_test I: pybuild base:184: cd /build/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build; python2.7 -m nose tests .......E.E...... EEE........................................................................................................................................................................................................................................S............. ====================================================================== ERROR: Correctly subsets samples in a hdf5 table ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/numpy/testing/decorators.py", line 147, in skipper_func return f(*args, **kwargs) File "/build/python-biom-format-2.1.5+dfsg/.pybuild/pythonX.Y_2.7/build/tests/test_cli/test_subset_table.py", line 82, in test_subset_observations_hdf5 json_table_str=None) File "biom/cli/table_subsetter.py", line 135, in _subset_table with biom_open(hdf5_biom) as f: File "/usr/lib/python2.7/contextlib.py", line 17, in __enter__ return self.gen.next() File "biom/util.py", line 440, in biom_open if os.path.getsize(fp) == 0: File "/usr/lib/python2.7/genericpath.py", line 57, in getsize return os.stat(filename).st_size OSError: [Errno 2] No such file or directory: 'test_data/test.biom' despite I did copy the test_data into {build_dir}. Any help would be welcome. Kind regards Andreas. [1] git://anonscm.debian.org/debian-med/python-biom-format.git -- http://fam-tille.de