Hi Scott, On Sat, Aug 13, 2016 at 12:41:42PM -0400, Scott Kitterman wrote: > > > > > > Any more complete hint from a possibly bowtie2 user would be helpful > > > > > > Andreas. > > > > > > [1] svn://anonscm.debian.org/debian-med/trunk/packages/srst2/trunk/ > > A link to a build log showing the test failure might be helpful.
There is no such link. If it helps I could migrate from SVN to Git which might lower the barrier for reproducing the issue. The interesting part of the build log is cd tests && python test_slurm_srst2.py && python test_srst2.py ........... ---------------------------------------------------------------------- Ran 11 tests in 0.040s OK .............FF.. ====================================================================== FAIL: test_run_bowtie_with_defaults (__main__.TestRunBowtie) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/mock/mock.py", line 1305, in patched return func(*args, **keywargs) File "test_srst2.py", line 213, in test_run_bowtie_with_defaults run_mock.assert_called_once_with(expected_bowtie2_command) File "/usr/lib/python2.7/dist-packages/mock/mock.py", line 947, in assert_called_once_with raise AssertionError(msg) AssertionError: Expected 'run_command' to be called once. Called 0 times. ====================================================================== FAIL: test_run_bowtie_with_overide (__main__.TestRunBowtie) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/mock/mock.py", line 1305, in patched return func(*args, **keywargs) File "test_srst2.py", line 180, in test_run_bowtie_with_overide run_mock.assert_called_once_with(expected_bowtie2_command) File "/usr/lib/python2.7/dist-packages/mock/mock.py", line 947, in assert_called_once_with raise AssertionError(msg) AssertionError: Expected 'run_command' to be called once. Called 0 times. ---------------------------------------------------------------------- Ran 17 tests in 0.060s FAILED (failures=2) Kind regards Andreas. -- http://fam-tille.de