Hi Scott,
thanks a lot for your hint.
On Thu, Dec 19, 2019 at 01:34:08PM -0500, Scott Talbert wrote:
>
> The 'file' class doesn't exist anymore in Python 3. You'll have to rewrite
> myfile to not use it.
OK, I simply went with
...
@@ -608,6 +608,11 @@ Last-Update: Thu, 19 Dec 2019 10:43:09 +0100
# from __future__ import generators # Necessary before Python 2.3
+-class myfile(file):
++class myfile():
+ "A temporary anonymous file"
+ def __init__(self):
+ filename = tempfile.mktemp()
@@ -27,8 +27,8 @@ class ListLikeFileIter:
self._fileIter = iter(self._fileptr.readline,"")
def __del__(self):
...
This brings me to the next error where a Module written in C is not
found:
python3 /usr/bin/../lib/atac/bin/AtacDriver.py
/tmp/atac-test.XqdEPl/results/work/LeprvsTuber.matches.extended
Traceback (most recent call last):
File "/usr/bin/../lib/atac/bin/AtacDriver.py", line 26, in <module>
import localAlignerInterface
ModuleNotFoundError: No module named 'localAlignerInterface'
PYTHONPATH=/usr/bin/../lib/atac/lib
Chainer failed.
The file /usr/lib/atac/lib/localAlignerInterfacemodule.so exists
but it seems the Python3 script can't load it.
Kind regards
Andreas.
--
http://fam-tille.de
