Your message dated Fri, 16 Nov 2018 08:39:04 +0000
with message-id <e1gnzea-0005hz...@fasolo.debian.org>
and subject line Bug#913455: fixed in cod-tools 2.2+dfsg-4
has caused the Debian Bug report #913455,
regarding spglib breaks cod-tools autopkgtest
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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913455: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=913455
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--- Begin Message ---
Source: spglib, cod-tools
Control: found -1 spglib/1.11.0-1
Control: found -1 cod-tools/2.2+dfsg-3
X-Debbugs-CC: debian...@lists.debian.org
User: debian...@lists.debian.org
Usertags: breaks needs-update
Dear maintainers,
With a recent upload of spglib the autopkgtest of cod-tools fails in
testing when that autopkgtest is run with the binary packages of spglib
from unstable. It passes when run with only packages from testing. In
tabular form:
pass fail
spglib from testing 1.11.0-1
cod-tools from testing 2.2+dfsg-3
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is contributing to the delay of the migration
of spglib to testing [1]. Due to the nature of this issue, I filed this
bug report against both packages. Can you please investigate the
situation and reassign the bug to the right package? If needed, please
change the bug's severity.
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=spglib
https://ci.debian.net/data/autopkgtest/testing/amd64/c/cod-tools/1296192/log.gz
/tmp/autopkgtest-lxc.9ex462xd/downtmp/autopkgtest_tmp/tests/cases/cif_find_symmetry_001.inp:
FAILED:
50,53c50,53
< V1 V 0.5 0.8222 0.25 0.00000 Uiso 1.00
< H2 H 0.5 0.5149 0.25 0.00000 Uiso 0.50
< O9 O 0 0.7111 0.25 0.00000 Uiso 1.00
< O10 O 0 0.9262 0.25 0.00000 Uiso 1.00
---
> V1 V 0.5 0.1778 0.25 0.00000 Uiso 1.00
> H2 H 0.5 0.4851 0.25 0.00000 Uiso 0.50
> O9 O 1 0.2889 0.25 0.00000 Uiso 1.00
> O10 O 1 0.0738 0.25 0.00000 Uiso 1.00
/tmp/autopkgtest-lxc.9ex462xd/downtmp/autopkgtest_tmp/tests/cases/cif_find_symmetry_002.inp:
OK
/tmp/autopkgtest-lxc.9ex462xd/downtmp/autopkgtest_tmp/tests/cases/cif_find_symmetry_003.inp:
Test skipped by request - test only compatible with spglib v1.9.9
/tmp/autopkgtest-lxc.9ex462xd/downtmp/autopkgtest_tmp/tests/cases/cif_find_symmetry_004.inp:
Test skipped by request - test only compatible with spglib v1.9.9
/tmp/autopkgtest-lxc.9ex462xd/downtmp/autopkgtest_tmp/tests/cases/cif_find_symmetry_005.inp:
FAILED:
32,33c32,33
< _cell_angle_alpha 89.9999831346
< _cell_angle_beta 89.9999831346
---
> _cell_angle_alpha 90.0000168654
> _cell_angle_beta 90.0000168654
/tmp/autopkgtest-lxc.9ex462xd/downtmp/autopkgtest_tmp/tests/cases/cif_find_symmetry_006.inp:
OK
/tmp/autopkgtest-lxc.9ex462xd/downtmp/autopkgtest_tmp/tests/cases/cif_find_symmetry_007.inp:
Test skipped by request - test only compatible with spglib v1.9.9
/tmp/autopkgtest-lxc.9ex462xd/downtmp/autopkgtest_tmp/tests/cases/cif_find_symmetry_008.inp:
FAILED:
2c2
< _cell_length_a 4.01206506674
---
> _cell_length_a 4.01206456672
5,7c5,7
< _cell_angle_alpha 90.0000000001
< _cell_angle_beta 89.9999999995
< _cell_angle_gamma 120.000007695
---
> _cell_angle_alpha 89.9999999999
> _cell_angle_beta 89.9999999996
> _cell_angle_gamma 119.999995327
24,25c24,25
< Ac 0.333333333333 0.666666666667 0.666666666667
< Ac 0.666666666667 0.333333333333 0.555533333333
---
> Ac 0.666666666667 0.333333333333 0.333333333333
> Ac 0.333333333333 0.666666666667 0.444466666667
signature.asc
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: cod-tools
Source-Version: 2.2+dfsg-4
We believe that the bug you reported is fixed in the latest version of
cod-tools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 913...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andrius Merkys <andrius.mer...@gmail.com> (supplier of updated cod-tools
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 16 Nov 2018 02:05:16 -0500
Source: cod-tools
Binary: libcexceptions0 libcexceptions-dev libgetoptions0 libgetoptions-dev
libcodcif2 libcodcif-dev libcod-precision-perl libcod-usermessage-perl
libcod-cif-parser-bison-perl libcod-cif-parser-yapp-perl python-pycodcif
python3-pycodcif cod-tools
Architecture: source
Version: 2.2+dfsg-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Andrius Merkys <andrius.mer...@gmail.com>
Description:
cod-tools - tools for manipulating CIF format files
libcexceptions-dev - C exception handling library (development files)
libcexceptions0 - C exception handling library
libcod-cif-parser-bison-perl - error-correcting CIF parser - Perl bindings
libcod-cif-parser-yapp-perl - error-correcting CIF parser - pure Perl
implementation
libcod-precision-perl - COD precision handling module for Perl language
libcod-usermessage-perl - COD message formatting module for Perl language
libcodcif-dev - error-correcting CIF parser - headers and static libraries
libcodcif2 - error-correcting CIF parser - shared library
libgetoptions-dev - Command line argument processing library for C
(development files
libgetoptions0 - Command line argument processing library for C
python-pycodcif - error-correcting CIF parser - Python bindings
python3-pycodcif - error-correcting CIF parser - Python3 bindings
Closes: 913455
Changes:
cod-tools (2.2+dfsg-4) unstable; urgency=medium
.
* Skipping CI tests too sensitive to spglib version (Closes: #913455).
* Package cod-tools depends on libparse-yapp-perl. Currently, it gets this
dependency from libcod-cif-parser-yapp-perl, but strictly speaking
cod-tools has to have it in its depends, as some modules use it directly.
* debian/control: package build-depends on gawk, as it is used in
after-build tests.
* Bumping Standards Version to 4.2.1.
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cod-tools_2.2+dfsg-4.debian.tar.xz
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Files:
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