Bug#926215: marked as done (dune-pdelab: testpk fails with assertion failure)

Debian Bug Tracking System Sun, 05 May 2019 07:09:40 -0700

Your message dated Sun, 5 May 2019 16:05:38 +0200
with message-id <20190505140538.gzqt3pf7rqsmz7fp@nucold>
and subject line Re: dune-pdelab: FTBFS with gcc 8.3
has caused the Debian Bug report #926215,
regarding dune-pdelab: testpk fails with assertion failure
to be marked as done.


This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
926215: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=926215
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

--- Begin Message ---

Package: src:dune-pdelab
Version: 2.6~20180302-1
Severity: serious
Tags: ftbfs

Dear maintainer:

I tried to build this package in buster but it failed:

--------------------------------------------------------------------------------
[...]
 debian/rules binary-indep
dh binary-indep --parallel --builddirectory=build
   dh_update_autotools_config -i -O--parallel -O--builddirectory=build
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- -DBUILD_SHARED_LIBS=1
        cd build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None 
-DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var 
-DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON 
-DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON "-GUnix Makefiles" 
-DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu 
-DBUILD_SHARED_LIBS=1 ..
-- The C compiler identification is GNU 8.3.0
-- The CXX compiler identification is GNU 8.3.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features

[... snipped ...]

cd "/<<PKGBUILDDIR>>/build/dune/pdelab/test" && /usr/bin/c++  -DENABLE_EIGEN=1 
-DENABLE_GMP=1 -DENABLE_MPI=1 -DENABLE_SUITESPARSE=1 -DENABLE_SUPERLU=1 
-DENABLE_TBB=1 -DENABLE_UG=1 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX -DMPIPP_H 
-DMPI_NO_CPPBIND -DModelP -DUG_USE_NEW_DIMENSION_DEFINES -D_TBB_CPP0X 
-I"/<<PKGBUILDDIR>>/build" -I"/<<PKGBUILDDIR>>" 
-I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi 
-I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/eigen3 
-I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/alberta  
-std=c++17 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 
-D_FORTIFY_SOURCE=2 -fPIE   -o 
CMakeFiles/testdunefunctionsgfs.dir/testdunefunctionsgfs.cc.o -c 
"/<<PKGBUILDDIR>>/dune/pdelab/test/testdunefunctionsgfs.cc"
In file included from /usr/include/dune/istl/paamg/amg.hh:9,
                 from 
/<<PKGBUILDDIR>>/dune/pdelab/backend/istl/seqistlsolverbackend.hh:15,
                 from 
/<<PKGBUILDDIR>>/dune/pdelab/backend/istl/istlsolverbackend.hh:6,
                 from /<<PKGBUILDDIR>>/dune/pdelab/backend/istl.hh:7,
                 from 
/<<PKGBUILDDIR>>/dune/pdelab/backend/istl/dunefunctions.hh:6,
                 from 
/<<PKGBUILDDIR>>/dune/pdelab/gridfunctionspace/dunefunctionsgridfunctionspace.hh:16,
                 from 
/<<PKGBUILDDIR>>/dune/pdelab/test/testdunefunctionsgfs.cc:15:
/usr/include/dune/istl/paamg/transfer.hh:97:5: error: no declaration matches 
'void Dune::Amg::Transfer<V, V1, 
Dune::Amg::SequentialInformation>::prolongateVector(const 
Dune::Amg::AggregatesMap<V>&, Dune::Amg::Transfer<V, V1, 
Dune::Amg::SequentialInformation>::Vector&, Dune::Amg::Transfer<V, V1, 
Dune::Amg::SequentialInformation>::Vector&, Dune::Amg::Transfer<V, V1, 
Dune::Amg::SequentialInformation>::Vector&, T, const 
Dune::Amg::SequentialInformation&, const Redist&)'
     Transfer<V,V1,SequentialInformation>::prolongateVector(const 
AggregatesMap<Vertex>& aggregates,
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/dune/istl/paamg/transfer.hh:62:19: note: candidates are: 
'template<class V, class V1> template<class T1> static void 
Dune::Amg::Transfer<V, V1, 
Dune::Amg::SequentialInformation>::prolongateVector(const 
Dune::Amg::AggregatesMap<V>&, Dune::Amg::Transfer<V, V1, 
Dune::Amg::SequentialInformation>::Vector&, Dune::Amg::Transfer<V, V1, 
Dune::Amg::SequentialInformation>::Vector&, T1, const 
Dune::Amg::SequentialInformation&)'
       static void prolongateVector(const AggregatesMap<Vertex>& aggregates, 
Vector& coarse, Vector& fine,
                   ^~~~~~~~~~~~~~~~
/usr/include/dune/istl/paamg/transfer.hh:57:19: note:                 
'template<class V, class V1> template<class T1> static void 
Dune::Amg::Transfer<V, V1, 
Dune::Amg::SequentialInformation>::prolongateVector(const 
Dune::Amg::AggregatesMap<V>&, Dune::Amg::Transfer<V, V1, 
Dune::Amg::SequentialInformation>::Vector&, Dune::Amg::Transfer<V, V1, 
Dune::Amg::SequentialInformation>::Vector&, Dune::Amg::Transfer<V, V1, 
Dune::Amg::SequentialInformation>::Vector&, T1, const 
Dune::Amg::SequentialInformation&, const Redist&)'
       static void prolongateVector(const AggregatesMap<Vertex>& aggregates, 
Vector& coarse, Vector& fine,
                   ^~~~~~~~~~~~~~~~
/usr/include/dune/istl/paamg/transfer.hh:50:11: note: 'class 
Dune::Amg::Transfer<V, V1, Dune::Amg::SequentialInformation>' defined here
     class Transfer<V,V1, SequentialInformation>
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/dune/istl/paamg/transfer.hh:111:5: error: no declaration matches 
'void Dune::Amg::Transfer<V, V1, 
Dune::Amg::SequentialInformation>::prolongateVector(const 
Dune::Amg::AggregatesMap<V>&, Dune::Amg::Transfer<V, V1, 
Dune::Amg::SequentialInformation>::Vector&, Dune::Amg::Transfer<V, V1, 
Dune::Amg::SequentialInformation>::Vector&, T, const 
Dune::Amg::SequentialInformation&)'
     Transfer<V,V1,SequentialInformation>::prolongateVector(const 
AggregatesMap<Vertex>& aggregates,
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/dune/istl/paamg/transfer.hh:62:19: note: candidates are: 
'template<class V, class V1> template<class T1> static void 
Dune::Amg::Transfer<V, V1, 
Dune::Amg::SequentialInformation>::prolongateVector(const 
Dune::Amg::AggregatesMap<V>&, Dune::Amg::Transfer<V, V1, 
Dune::Amg::SequentialInformation>::Vector&, Dune::Amg::Transfer<V, V1, 
Dune::Amg::SequentialInformation>::Vector&, T1, const 
Dune::Amg::SequentialInformation&)'
       static void prolongateVector(const AggregatesMap<Vertex>& aggregates, 
Vector& coarse, Vector& fine,
                   ^~~~~~~~~~~~~~~~
/usr/include/dune/istl/paamg/transfer.hh:57:19: note:                 
'template<class V, class V1> template<class T1> static void 
Dune::Amg::Transfer<V, V1, 
Dune::Amg::SequentialInformation>::prolongateVector(const 
Dune::Amg::AggregatesMap<V>&, Dune::Amg::Transfer<V, V1, 
Dune::Amg::SequentialInformation>::Vector&, Dune::Amg::Transfer<V, V1, 
Dune::Amg::SequentialInformation>::Vector&, Dune::Amg::Transfer<V, V1, 
Dune::Amg::SequentialInformation>::Vector&, T1, const 
Dune::Amg::SequentialInformation&, const Redist&)'
       static void prolongateVector(const AggregatesMap<Vertex>& aggregates, 
Vector& coarse, Vector& fine,
                   ^~~~~~~~~~~~~~~~
/usr/include/dune/istl/paamg/transfer.hh:50:11: note: 'class 
Dune::Amg::Transfer<V, V1, Dune::Amg::SequentialInformation>' defined here
     class Transfer<V,V1, SequentialInformation>
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[5]: *** 
[dune/pdelab/test/CMakeFiles/testdunefunctionsgfs.dir/build.make:66: 
dune/pdelab/test/CMakeFiles/testdunefunctionsgfs.dir/testdunefunctionsgfs.cc.o] 
Error 1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/build'
make[4]: *** [CMakeFiles/Makefile2:2850: 
dune/pdelab/test/CMakeFiles/testdunefunctionsgfs.dir/all] Error 2
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build'
make[3]: *** [CMakeFiles/Makefile2:1296: CMakeFiles/build_tests.dir/rule] Error 
2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
make[2]: *** [Makefile:655: build_tests] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
dh_auto_build: cd build && make -j1 build_tests returned exit code 2
make[1]: *** [/usr/share/dune/dune-debian.mk:20: override_dh_auto_test] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:6: binary-indep] Error 2
dpkg-buildpackage: error: debian/rules binary-indep subprocess returned exit 
status 2
--------------------------------------------------------------------------------

The above is just how the build ends but I believe it's the most relevant part.

The build was made in my autobuilder with "dpkg-buildpackage -A".
I can't currently offer a second independent build log (reproducible-builds is 
down),
but this seems a C++ problem to me.

If this is really a bug in one of the build-depends, please use reassign and 
affects,
so that this is still visible in the BTS web page for this package.

Thanks.

--- End Message ---

--- Begin Message ---

Version: 2.6~20180302-1

On Sun, May 05, 2019 at 09:41:21AM +0100, Rebecca N. Palmer wrote:
> Control: tags -1 moreinfo
> 
> It works for me, in both sid and buster cowbuilder chroots.

Same here, just tried in both buster and sid, using sbuild.
So, I'm closing the bug.

[ Ansgar: If you still can reproduce the assertion failure, please file
  a new bug. It's better not to mix different issues in the same report ].

> Has it been
> fixed (the version of dune-pdelab hasn't changed, but the bug may have been
> elsewhere), or is it hardware/setup dependent?

I can only speak for the bug I initially reported here, which
definitely seemed like a C++ problem to me and not related to the
building environment. I agree with Ansgar that it was probably
a problem with GCC.

(It would have been nice to know where the real problem was, but
probably it does not worth the effort now. If anybody is really
interested, it would still be possible to do so by recreating the
state of buster in the past using snapshot.debian.org).

Thanks.

--- End Message ---

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Bug#926215: marked as done (dune-pdelab: testpk fails with assertion failure)

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