Your message dated Fri, 16 Aug 2019 15:34:24 +0000
with message-id <[email protected]>
and subject line Bug#925634: fixed in apophenia 1.0+ds-8
has caused the Debian Bug report #925634,
regarding apophenia: ftbfs with GCC-9
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
925634: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=925634
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:apophenia
Version: 1.0+ds-7
Severity: normal
Tags: sid bullseye
User: [email protected]
Usertags: ftbfs-gcc-9
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-9/g++-9, but succeeds to build with gcc-8/g++-8. The
severity of this report will be raised before the bullseye release,
so nothing has to be done for the buster release.
The full build log can be found at:
http://people.debian.org/~doko/logs/gcc9-20190321/apophenia_1.0+ds-7_unstable_gcc9.log
The last lines of the build log are at the end of this report.
To build with GCC 9, either set CC=gcc-9 CXX=g++-9 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-9/porting_to.html
GCC 9 also passes the linker option --as-needed by default; typical
build issues are passing libraries before object files to the linker,
or underlinking of convenience libraries built from the same source.
[...]
# XFAIL: 0
# FAIL: 5
# XPASS: 0
# ERROR: 0
.. contents:: :depth: 2
FAIL: nist_tests
================
gsl: ../gsl/gsl_vector_double.h:180: ERROR: index out of range
Default GSL error handler invoked.
FAIL nist_tests (exit status: 134)
FAIL: test_apop
===============
gsl: ../gsl/gsl_vector_double.h:180: ERROR: index out of range
Sundry tests for Apophenia.
Running relatively faster tests. To run slower tests (primarily simulated
annealing), use -s.
For quieter output, use -q. To change thread count (default=2), use -t1, -t2,
-t3, ...
Default GSL error handler invoked.
FAIL test_apop (exit status: 134)
FAIL: ../eg/iv
==============
gsl: ../gsl/gsl_vector_double.h:180: ERROR: index out of range
Default GSL error handler invoked.
FAIL ../eg/iv (exit status: 134)
FAIL: ../eg/ols
===============
gsl: ../gsl/gsl_vector_double.h:180: ERROR: index out of range
Default GSL error handler invoked.
FAIL ../eg/ols (exit status: 134)
FAIL: ../eg/ols_oneliner
========================
gsl: ../gsl/gsl_vector_double.h:180: ERROR: index out of range
Default GSL error handler invoked.
FAIL ../eg/ols_oneliner (exit status: 134)
============================================================================
Testsuite summary for apophenia 1.0
============================================================================
# TOTAL: 30
# PASS: 25
# SKIP: 0
# XFAIL: 0
# FAIL: 5
# XPASS: 0
# ERROR: 0
============================================================================
See tests/test-suite.log
Please report to [email protected]
============================================================================
make[4]: *** [Makefile:1822: test-suite.log] Error 1
make[4]: Leaving directory '/<<BUILDDIR>>/apophenia-1.0+ds/_build/tests'
make[3]: *** [Makefile:1930: check-TESTS] Error 2
make[3]: Leaving directory '/<<BUILDDIR>>/apophenia-1.0+ds/_build/tests'
make[2]: *** [Makefile:2347: check-am] Error 2
make[2]: Leaving directory '/<<BUILDDIR>>/apophenia-1.0+ds/_build/tests'
make[1]: *** [Makefile:959: check-recursive] Error 1
make[1]: Leaving directory '/<<BUILDDIR>>/apophenia-1.0+ds/_build'
dh_auto_test: cd _build && make -j4 check VERBOSE=1 returned exit code 2
make: *** [debian/rules:22: build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit
status 2
--- End Message ---
--- Begin Message ---
Source: apophenia
Source-Version: 1.0+ds-8
We believe that the bug you reported is fixed in the latest version of
apophenia, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Jerome Benoit <[email protected]> (supplier of updated apophenia package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 16 Aug 2019 15:20:10 +0000
Source: apophenia
Architecture: source
Version: 1.0+ds-8
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Jerome Benoit <[email protected]>
Closes: 925634
Changes:
apophenia (1.0+ds-8) unstable; urgency=medium
.
* RC fix release (Closes: #925634), implement workaround that works
(this looks like a gcc9 compiler issue).
* Debianization:
- debian/copyright:
- Copyright year tuples, refresh;
- Format URI, secure;
- debian/control:
- debhelper, bump to 12;
- Standards-Version, bump to 4.4.0 (no change);
- Vcs-*, migration to Salsa;
- debian/rules:
- get-orig-source target, discard;
- debian/patches/*:
- d/p/upstream-{mysql-8.0,fix-implicit-model-ols_log_likelihood}.patch,
introduce;
- d/p/debianization-bug-gcc9-XXX.patch, introduce;
- debian/source/*:
- d/s/lintian-overrides, refresh;
- d/s/options, discard;
- debian/compat, delete.
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