Your message dated Thu, 14 Nov 2019 22:00:22 +0000
with message-id <[email protected]>
and subject line Bug#926347: fixed in suitesparse 1:5.6.0+dfsg-1
has caused the Debian Bug report #926347,
regarding suitesparse: FTBFS on hurd-i386: mach/clock.h non-existent on GNU/Hurd
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
926347: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=926347
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: suitesparse
Severity: normal
Version: 1:5.4.0+dfsg-1
Tags: patch
User: [email protected]
Usertags: hurd
X-Debbugs-CC: [email protected]
Suitesparse fails to build from source on hurd-i386 because the header
mach/clock.h is not contained in GNU Mach, however it gets included in
GraphBLAS/Demo/Include/simple_timer.h used by
GraphBLAS/Demo/Source/simple_timer.c.
For a detailed log, please see [0].
The patch consists of the following changes:
simple_timer.h
1. Enable the Linux case (not strictly necessary, due to the existence
of an OpenMP and a C11 fallback case).
2. Enable the Mach case only if __APPLE__ is defined
simple_timer.c
1. Enable the Linux case on Hurd (not necessary, see simple_timer.h)
2. Disable the Mach case unless __APPLE__ is defined (not strictly
necessary, because of the OpenMP case)
Using the Linux case is recommended in [1], however [1] does not
mention the C11 clock function.
Thanks,
Paul Sonnenschein
[0]:
https://buildd.debian.org/status/fetch.php?pkg=suitesparse&arch=hurd-i386&ver=1%3A5.4.0%2Bdfsg-1&stamp=1545919779&raw=0
[1]: https://www.gnu.org/software/hurd/hurd/porting/guidelines.html
diff --git a/GraphBLAS/Demo/Include/simple_timer.h b/GraphBLAS/Demo/Include/simple_timer.h
index 23a1c358..ef24c371 100644
--- a/GraphBLAS/Demo/Include/simple_timer.h
+++ b/GraphBLAS/Demo/Include/simple_timer.h
@@ -37,7 +37,7 @@
#define _POSIX_C_SOURCE 200809L
#include <time.h>
-#if defined ( __linux__ )
+#if defined ( __linux__ ) || defined ( __GNU__ )
#include <sys/time.h>
#endif
@@ -45,7 +45,7 @@
#include <omp.h>
#endif
-#if defined ( __MACH__ )
+#if defined ( __MACH__ ) && defined ( __APPLE__ )
#include <mach/clock.h>
#include <mach/mach.h>
#endif
diff --git a/GraphBLAS/Demo/Source/simple_timer.c b/GraphBLAS/Demo/Source/simple_timer.c
index 57239d18..28fc9b9d 100644
--- a/GraphBLAS/Demo/Source/simple_timer.c
+++ b/GraphBLAS/Demo/Source/simple_timer.c
@@ -27,7 +27,7 @@ void simple_tic /* returns current time in seconds and nanoseconds */
tic [0] = omp_get_wtime ( ) ;
tic [1] = 0 ;
- #elif defined ( __linux__ )
+ #elif defined ( __linux__ ) || defined ( __GNU__ )
/* Linux has a very low resolution clock() function, so use the high
resolution clock_gettime instead. May require -lrt */
@@ -36,7 +36,7 @@ void simple_tic /* returns current time in seconds and nanoseconds */
tic [0] = (double) t.tv_sec ;
tic [1] = (double) t.tv_nsec ;
- #elif defined ( __MACH__ )
+ #elif defined ( __MACH__ ) && defined ( __APPLE__ )
clock_serv_t cclock ;
mach_timespec_t t ;
signature.asc
Description: This is a digitally signed message part
--- End Message ---
--- Begin Message ---
Source: suitesparse
Source-Version: 1:5.6.0+dfsg-1
We believe that the bug you reported is fixed in the latest version of
suitesparse, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sébastien Villemot <[email protected]> (supplier of updated suitesparse
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 13 Nov 2019 17:23:20 +0100
Source: suitesparse
Binary: libamd2 libamd2-dbgsym libbtf1 libbtf1-dbgsym libcamd2 libcamd2-dbgsym
libccolamd2 libccolamd2-dbgsym libcholmod3 libcholmod3-dbgsym libcolamd2
libcolamd2-dbgsym libcxsparse3 libcxsparse3-dbgsym libgraphblas3
libgraphblas3-dbgsym libklu1 libklu1-dbgsym libldl2 libldl2-dbgsym libmongoose2
libmongoose2-dbgsym librbio2 librbio2-dbgsym libspqr2 libspqr2-dbgsym
libsuitesparse-dev libsuitesparse-doc libsuitesparseconfig5
libsuitesparseconfig5-dbgsym libumfpack5 libumfpack5-dbgsym mongoose
mongoose-dbgsym
Architecture: source amd64 all
Version: 1:5.6.0+dfsg-1
Distribution: experimental
Urgency: medium
Maintainer: Debian Science Team
<[email protected]>
Changed-By: Sébastien Villemot <[email protected]>
Description:
libamd2 - approximate minimum degree ordering library for sparse matrices
libbtf1 - permutation to block triangular form library for sparse matrices
libcamd2 - symmetric approximate minimum degree library for sparse matrices
libccolamd2 - constrained column approximate library for sparse matrices
libcholmod3 - sparse Cholesky factorization library for sparse matrices
libcolamd2 - column approximate minimum degree ordering library for sparse mat
libcxsparse3 - concise sparse matrix library
libgraphblas3 - graph algorithms via sparse matrix operations on semirings
libklu1 - circuit simulation sparse LU factorization library
libldl2 - simple LDL' factorization library for sparse matrices
libmongoose2 - graph partitioning tool that can quickly compute edge cuts
(share
librbio2 - read/write sparse matrices in Rutherford/Boeing format
libspqr2 - sparse QR factorization library
libsuitesparse-dev - libraries for sparse matrices computations (development
files)
libsuitesparse-doc - libraries for sparse matrices computations (documentation)
libsuitesparseconfig5 - configuration routines for all SuiteSparse modules
libumfpack5 - sparse LU factorization library
mongoose - graph partitioning tool that can quickly compute edge cuts (execu
Closes: 926347
Changes:
suitesparse (1:5.6.0+dfsg-1) experimental; urgency=medium
.
* New upstream version 5.6.0+dfsg
* d/watch: now fetch from Github
* d/copyright:
+ exclude more PDFs without source code
+ reflect upstream changes
* Bump to debhelper 12
* graphblas-build.patch: new patch, ensures that static GraphBLAS is compiled
* SOVERSION bump for GraphBLAS (2 → 3)
* Bump S-V to 4.4.1
* hurd-i386.patch: new patch, fixes FTBFS on hurd-i386.
Thanks to Paul Sonnenschein (Closes: #926347)
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librbio2-dbgsym_5.6.0+dfsg-1_amd64.deb
5b0721c0cb41c075100a0766a8704a2b 38712 libs optional
librbio2_5.6.0+dfsg-1_amd64.deb
771c5e01455b2e406991c755d6c7d0bd 211876 debug optional
libspqr2-dbgsym_5.6.0+dfsg-1_amd64.deb
81e4468a855519d44c05bb86a123726e 79596 libs optional
libspqr2_5.6.0+dfsg-1_amd64.deb
d2a8a5324d30d75ff1f0285ca8b5d004 2669116 libdevel optional
libsuitesparse-dev_5.6.0+dfsg-1_amd64.deb
5d41a3bade81dca1b3cb286824bd41f2 3197472 doc optional
libsuitesparse-doc_5.6.0+dfsg-1_all.deb
238dcc74fa602475963a3c8fea2056cb 6616 debug optional
libsuitesparseconfig5-dbgsym_5.6.0+dfsg-1_amd64.deb
4276b4ed684c91a787c31a9b97ae794c 21956 libs optional
libsuitesparseconfig5_5.6.0+dfsg-1_amd64.deb
3d45da77daa45a52a679e1046786a032 759024 debug optional
libumfpack5-dbgsym_5.6.0+dfsg-1_amd64.deb
cd84fcae9a37b61d175829bcc8c42c3b 244864 libs optional
libumfpack5_5.6.0+dfsg-1_amd64.deb
06f9dc3bad1f87131ad8a623753a32ea 41268 debug optional
mongoose-dbgsym_5.6.0+dfsg-1_amd64.deb
3ff88ef70cd3f47b3770b9c465618670 23700 math optional
mongoose_5.6.0+dfsg-1_amd64.deb
6c7a1f965105d346231beb4e3080aee7 19091 math optional
suitesparse_5.6.0+dfsg-1_amd64.buildinfo
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