Source: dolfin Version: 2019.2.0~git20200629.946dbd3+lfs-4 Severity: serious Justification: FTBFS on amd64 Tags: bullseye sid ftbfs Usertags: ftbfs-20201226 ftbfs-bullseye
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/dolfin" && /usr/bin/c++ > -DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI > -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I"/<<PKGBUILDDIR>>" > -I"/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" -isystem > /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 > -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem > /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem > /usr/lib/x86_64-linux-gnu/openmpi/include -fpermissive -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG > -fPIC -std=c++11 -o > CMakeFiles/dolfin.dir/fem/MixedLinearVariationalSolver.cpp.o -c > "/<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp" > /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp: In member > function ‘void > dolfin::MixedLinearVariationalSolver::solve(dolfin::MixedLinearVariationalSolver::assembled_system_type)’: > /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp:240:23: error: > variable ‘dolfin::PETScNestMatrix A’ has initializer but incomplete type > 240 | PETScNestMatrix A(As); > | ^ > /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp:281:5: error: > ‘PETScLUSolver’ was not declared in this scope > 281 | PETScLUSolver solver(comm, solver_type); > | ^~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp:285:5: error: > ‘solver’ was not declared in this scope; did you mean ‘solve’? > 285 | solver.set_operator(A); > | ^~~~~~ > | solve > /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp:290:5: error: > ‘PETScKrylovSolver’ was not declared in this scope > 290 | PETScKrylovSolver solver(comm, solver_type, pc_type); > | ^~~~~~~~~~~~~~~~~ > /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp:291:5: error: > ‘solver’ was not declared in this scope; did you mean ‘solve’? > 291 | solver.parameters.update(parameters("krylov_solver")); > | ^~~~~~ > | solve > /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp:303:13: error: > ‘PETScVector’ was not declared in this scope > 303 | as_type<PETScVector>(u)->update_ghost_values(); > | ^~~~~~~~~~~ > /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp:303:27: error: > no matching function for call to ‘as_type<<expression error> > >(std::shared_ptr<dolfin::GenericVector>&)’ > 303 | as_type<PETScVector>(u)->update_ghost_values(); > | ^ > In file included from /<<PKGBUILDDIR>>/dolfin/la/GenericTensor.h:38, > from /<<PKGBUILDDIR>>/dolfin/la/GenericMatrix.h:34, > from > /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp:27: > /<<PKGBUILDDIR>>/dolfin/la/LinearAlgebraObject.h:64:8: note: candidate: > ‘template<class Y, class X> Y& dolfin::as_type(X&)’ > 64 | Y& as_type(X& x) > | ^~~~~~~ > /<<PKGBUILDDIR>>/dolfin/la/LinearAlgebraObject.h:64:8: note: template > argument deduction/substitution failed: > /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp:303:27: error: > template argument 1 is invalid > 303 | as_type<PETScVector>(u)->update_ghost_values(); > | ^ > In file included from /<<PKGBUILDDIR>>/dolfin/la/GenericTensor.h:38, > from /<<PKGBUILDDIR>>/dolfin/la/GenericMatrix.h:34, > from > /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp:27: > /<<PKGBUILDDIR>>/dolfin/la/LinearAlgebraObject.h:84:24: note: candidate: > ‘template<class Y, class X> std::shared_ptr<_Tp> > dolfin::as_type(std::shared_ptr<_Tp>)’ > 84 | std::shared_ptr<Y> as_type(std::shared_ptr<X> x) > | ^~~~~~~ > /<<PKGBUILDDIR>>/dolfin/la/LinearAlgebraObject.h:84:24: note: template > argument deduction/substitution failed: > /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp:303:27: error: > template argument 1 is invalid > 303 | as_type<PETScVector>(u)->update_ghost_values(); > | ^ > make[4]: *** [dolfin/CMakeFiles/dolfin.dir/build.make:618: > dolfin/CMakeFiles/dolfin.dir/fem/MixedLinearVariationalSolver.cpp.o] Error 1 The full build log is available from: http://qa-logs.debian.net/2020/12/26/dolfin_2019.2.0~git20200629.946dbd3+lfs-4_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please marking it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with me so that we can identify if something relevant changed in the meantime. About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures. -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers