Your message dated Thu, 28 Sep 2023 15:54:12 +0000
with message-id <[email protected]>
and subject line Bug#1051781: fixed in h5py 3.9.0-1
has caused the Debian Bug report #1051781,
regarding python3-h5py: where is the egg files
to be marked as done.
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--
1051781: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1051781
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: python3-h5py
Version: 3.7.0-8
Severity: important
X-Debbugs-Cc: [email protected]
Dear Maintainer,
I am thre maintainer of silx
This package depende of python3-h5py and contain entry points.
The build is ok, but once installed I get this error message when I try to
start the application
$ silx view
Traceback (most recent call last):
File "/usr/bin/silx", line 33, in <module>
sys.exit(load_entry_point('silx==1.1.2', 'console_scripts', 'silx')())
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/silx/__main__.py", line 67, in main
status = launcher.execute(sys.argv)
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/silx/utils/launcher.py", line 294, in
execute
return command.execute(command_argv)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/silx/utils/launcher.py", line 128, in
execute
status = func(argv)
^^^^^^^^^^
File "/usr/lib/python3/dist-packages/silx/app/view/main.py", line 214, in main
mainQt(options)
File "/usr/lib/python3/dist-packages/silx/app/view/main.py", line 156, in
mainQt
import silx.gui.utils.matplotlib # noqa
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/silx/gui/utils/matplotlib.py", line 39,
in <module>
from pkg_resources import parse_version
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 3327,
in <module>
@_call_aside
^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 3302,
in _call_aside
f(*args, **kwargs)
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 3340,
in _initialize_master_working_set
working_set = WorkingSet._build_master()
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 631, in
_build_master
ws.require(__requires__)
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 968, in
require
needed = self.resolve(parse_requirements(requirements))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 829, in
resolve
dist = self._resolve_dist(
^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 870, in
_resolve_dist
raise DistributionNotFound(req, requirers)
pkg_resources.DistributionNotFound: The 'h5py' distribution was not found and
is required by hdf5plugin, silx
$ apt show python3-silx
Package: python3-silx
Version: 1.1.2+dfsg-2
Priority: optional
Section: python
Source: silx
Maintainer: Debian Science Maintainers
<[email protected]>
Installed-Size: 13,1 MB
Depends: python3 (<< 3.12), python3 (>= 3.11~), python3-dateutil,
python3-fabio, python3-h5py, python3-hdf5plugin, python3-mako,
python3-matplotlib, python3-numpy (>= 1:1.22.0), python3-numpy-abi9,
python3-opengl, python3-pil, python3-pkg-resources, python3-pyopencl,
python3-pyqt5, python3-pyqt5.qtopengl, python3-pyqt5.qtsvg, python3-qtconsole,
python3-scipy, python3:any, libc6 (>= 2.33), libgcc-s1 (>= 3.0), libgomp1 (>=
4.9), libstdc++6 (>= 5.2)
Homepage: https://github.com/silx-kit/silx
So my question is what should be canged in h5py in order to make this work.
thanks
Frederic
-- System Information:
Debian Release: trixie/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 6.4.0-1-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages python3-h5py depends on:
ii python3-h5py-serial 3.7.0-8
python3-h5py recommends no packages.
Versions of packages python3-h5py suggests:
pn python-h5py-doc <none>
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: h5py
Source-Version: 3.9.0-1
Done: Drew Parsons <[email protected]>
We believe that the bug you reported is fixed in the latest version of
h5py, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Drew Parsons <[email protected]> (supplier of updated h5py package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 28 Sep 2023 17:00:27 +0200
Source: h5py
Architecture: source
Version: 3.9.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Drew Parsons <[email protected]>
Closes: 1032586 1041480 1045045 1051781
Changes:
h5py (3.9.0-1) unstable; urgency=medium
.
* Team upload.
.
[ Drew Parsons ]
* New upstream release.
- applies debian patch doc_extlink_PR2112.patch
- versioned Build-Depends: python3-mpi4py (>= 3.1.4)
* skip network (ros3) tests
- debian/tests: add *-network tests with ros3
using needs-internet
- drop debian patch skip_ros_test_no_net.patch
- see upstream Issue #2286 for further discussion of problems with
the --no-network option that should instead be used
* update debian/rules to patch python packages in pyproject.toml not
setup.py for each flavour (serial,mpi)
* update debian patch skip_test_selection_assertion.patch to
handle the test of FancySelection by tuple.
- use sel.FancySelection.__name__ rather than a hardcoded string
* debian/tests: run tests via exit() to catch error conditions
* create h5py-*.dist-info separately for serial and mpi builds, and
provide generic h5py dist-info in python3-h5py. Provide top-level
__init__.py wrapper in python3-h5py. Closes: #1041480, #1051781.
python-h5py Replaces, Breaks: python3-h5py-serial (<< 3.9.0-1~)
* dh_clean removes .pytest_cache. Closes: #1045045.
.
[ Enrico Zini ]
* hdf5-plugin-lzf: added provides and autopkgtests after
https://salsa.debian.org/science-team/h5f-packaging-guidelines
Closes: #1032586
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