Package: coot
Version: 1.1.08+dfsg-2
Severity: important
X-Debbugs-Cc: pi...@debian.org
while trying to start coot, I get this error message.
$ coot
INFO:: built with GTK 4.12.5
pdd /usr/share/coot
WARNING:: Coot REFMAC dictionary override COOT_REFMAC_LIB_DIR
/usr/share/coot/lib failed to find the monomer library
WARNING:: COOT_PREFIX set, but no dictionary lib found
WARNING: Failed to read restraints dictionary.
ERROR:: Failure to read or parse /usr/share/coot/ui/coot-gtk4.ui
No function named `on_active_map_ok_button_clicked`.
It would be great if you could add an autopkgtest with timetout in order to
check if the coot GUI could start
something like
#!/bin/sh -ex
# display glxinfo
glxinfo
# Check that the GUI can be started
timeout --preserve-status 10s coot
ec=$?
# do not fail if the exit code is 143, it seems that there is an
# issue with mesa 16/04/2024. (I do not know if this is still required)
if [ $ec -eq 143 ]; then
exit 0;
else
exit $ec;
fi
Cheers
https://salsa.debian.org/science-team/silx/-/blob/master/debian/tests/gui?ref_type=heads
-- System Information:
Debian Release: trixie/sid
APT prefers unstable
APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 6.8.9-amd64 (SMP w/4 CPU threads; PREEMPT)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages coot depends on:
ii coot-data 1.1.08+dfsg-2
ii gir1.2-gtk-4.0 4.12.5+ds-6+b1
ii libasound2t64 1.2.11-1+b1
ii libatlas3-base [libblas.so.3] 3.10.3-14
ii libblas3 [libblas.so.3] 3.12.0-3
ii libboost-python1.83.0 [libboost-python1.83.0-py31 1.83.0-3
1]
ii libc6 2.38-11
ii libcairo2 1.18.0-3+b1
ii libclipper2 2.1.20201109-2+b1
ii libcootapi1.1 1.1.08+dfsg-2
ii libcurl3t64-gnutls 8.8.0-1
ii libepoxy0 1.5.10-1+b2
ii libfreetype6 2.13.2+dfsg-1+b4
ii libgcc-s1 14.1.0-1
ii libgdk-pixbuf-2.0-0 2.42.12+dfsg-1
ii libglib2.0-0t64 2.80.2-2
ii libgomp1 14.1.0-1
ii libgraphene-1.0-0 1.10.8-3+b1
ii libgsl27 2.7.1+dfsg-6+b1
ii libgtk-4-1 4.12.5+ds-6+b1
ii libmmdb2-0 2.0.22-1+b1
ii libopenblas0-pthread [libblas.so.3] 0.3.27+ds-2
ii libpango-1.0-0 1.52.2+ds-1
ii libpangocairo-1.0-0 1.52.2+ds-1
ii libpng16-16t64 1.6.43-5
ii libpython3.11t64 3.11.9-1
ii librdkit1 202309.3-3+b1
ii libsqlite3-0 3.45.3-1
ii libssm2 1.4.0-2+b1
ii libstdc++6 14.1.0-1
ii libvorbisfile3 1.3.7-2
ii python3 3.11.8-1
ii python3-gi 3.48.2-1
ii python3-rdkit 202309.3-3+b1
ii refmac-dictionary 5.41-2
ii zlib1g 1:1.3.dfsg+really1.3.1-1
coot recommends no packages.
Versions of packages coot suggests:
pn coot-doc <none>
-- no debconf information
--
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