Your message dated Sun, 30 Jun 2024 19:19:13 +0000
with message-id <e1so04v-000q05...@fasolo.debian.org>
and subject line Bug#1067234: fixed in symfit 0.5.6-3
has caused the Debian Bug report #1067234,
regarding symfit: autopkgtest regression with NumPy 1.26
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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1067234: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1067234
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: symfit
Version: 0.5.6-2
Severity: serious
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Dear maintainer,
your package has an autopkgtest regression with NumPy 1.26.
Hopefully relevant excerpt from the test log:
130s # Should no longer raise warnings, because internally we practice
130s # what we preach.
130s fit_custom = BFGS(chi_squared, [a, b])
130s > assert len(recwarn) == 0
130s E assert 1 == 0
130s E + where 1 = len(WarningsRecorder(record=True))
130s
130s tests/test_minimizers.py:120: AssertionError
130s =============================== warnings summary
===============================
130s symfit/core/operators.py:48
130s
/tmp/autopkgtest-lxc.jjpx74xp/downtmp/build.gp1/src/symfit/core/operators.py:48:
SyntaxWarning: invalid escape sequence '\*'
130s """
130s
130s symfit/core/support.py:296
130s
/tmp/autopkgtest-lxc.jjpx74xp/downtmp/build.gp1/src/symfit/core/support.py:296:
SyntaxWarning: invalid escape sequence '\*'
130s """
130s
130s symfit/core/printing.py:13
130s
/tmp/autopkgtest-lxc.jjpx74xp/downtmp/build.gp1/src/symfit/core/printing.py:13:
DeprecationWarning: pkg_resources is deprecated as an API. See
https://setuptools.pypa.io/en/latest/pkg_resources.html
130s import pkg_resources
130s
130s
../../../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871
130s /usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871:
DeprecationWarning: Deprecated call to
`pkg_resources.declare_namespace('mpl_toolkits')`.
130s Implementing implicit namespace packages (as specified in PEP 420) is
preferred to `pkg_resources.declare_namespace`. See
https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
130s declare_namespace(pkg)
130s
130s symfit/core/fit.py:32
130s
/tmp/autopkgtest-lxc.jjpx74xp/downtmp/build.gp1/src/symfit/core/fit.py:32:
SyntaxWarning: invalid escape sequence '\_'
130s """
130s
130s symfit/core/minimizers.py:211
130s
/tmp/autopkgtest-lxc.jjpx74xp/downtmp/build.gp1/src/symfit/core/minimizers.py:211:
SyntaxWarning: invalid escape sequence '\*'
130s '''
130s
130s symfit/core/minimizers.py:327
130s
/tmp/autopkgtest-lxc.jjpx74xp/downtmp/build.gp1/src/symfit/core/minimizers.py:327:
SyntaxWarning: invalid escape sequence '\*'
130s """
130s
130s symfit/core/minimizers.py:793
130s
/tmp/autopkgtest-lxc.jjpx74xp/downtmp/build.gp1/src/symfit/core/minimizers.py:793:
SyntaxWarning: invalid escape sequence '\*'
130s """
130s
130s symfit/core/fit_results.py:29
130s
/tmp/autopkgtest-lxc.jjpx74xp/downtmp/build.gp1/src/symfit/core/fit_results.py:29:
SyntaxWarning: invalid escape sequence '\*'
130s """
130s
130s symfit/core/objectives.py:389
130s
/tmp/autopkgtest-lxc.jjpx74xp/downtmp/build.gp1/src/symfit/core/objectives.py:389:
SyntaxWarning: invalid escape sequence '\c'
130s """
130s
130s ../../../../../usr/lib/python3/dist-packages/dateutil/tz/tz.py:37
130s /usr/lib/python3/dist-packages/dateutil/tz/tz.py:37:
DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and
scheduled for removal in a future version. Use timezone-aware objects to
represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp,
datetime.UTC).
130s EPOCH = datetime.datetime.utcfromtimestamp(0)
130s
130s tests/test_auto_fit.py: 3 warnings
130s tests/test_constrained.py: 14 warnings
130s tests/test_finite_difference.py: 1 warning
130s tests/test_fit_result.py: 5 warnings
130s tests/test_general.py: 16 warnings
130s tests/test_minimizers.py: 2 warnings
130s tests/test_objectives.py: 1 warning
130s tests/test_ode.py: 1 warning
130s
/tmp/autopkgtest-lxc.jjpx74xp/downtmp/build.gp1/src/symfit/core/fit.py:278:
DeprecationWarning: `product` is deprecated as of NumPy 1.25.0, and will be
removed in NumPy 2.0. Please use `prod` instead.
130s cov_matrix = self._covariance_matrix(best_fit_params,
130s
130s tests/test_auto_fit.py: 2 warnings
130s tests/test_constrained.py: 13 warnings
130s tests/test_finite_difference.py: 2 warnings
130s tests/test_fit_result.py: 1 warning
130s tests/test_general.py: 12 warnings
130s tests/test_global_opt.py: 3 warnings
130s tests/test_ode.py: 7 warnings
130s
/tmp/autopkgtest-lxc.jjpx74xp/downtmp/build.gp1/src/symfit/core/fit.py:301:
DeprecationWarning: `product` is deprecated as of NumPy 1.25.0, and will be
removed in NumPy 2.0. Please use `prod` instead.
130s cov_matrix = self._covariance_matrix(best_fit_params,
130s
130s tests/test_general.py::test_likelihood_fitting_exponential
130s /usr/lib/python3/dist-packages/_pytest/python.py:194:
DeprecationWarning: `product` is deprecated as of NumPy 1.25.0, and will be
removed in NumPy 2.0. Please use `prod` instead.
130s result = testfunction(**testargs)
130s
130s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
130s =========================== short test summary info
============================
130s FAILED tests/test_minimizers.py::test_custom_objective - assert 1 == 0
130s ======= 1 failed, 137 passed, 3 skipped, 95 warnings in 80.18s (0:01:20)
=======
Cheers
Timo
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--- End Message ---
--- Begin Message ---
Source: symfit
Source-Version: 0.5.6-3
Done: Alexandre Detiste <tc...@debian.org>
We believe that the bug you reported is fixed in the latest version of
symfit, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1067...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Alexandre Detiste <tc...@debian.org> (supplier of updated symfit package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 30 Jun 2024 19:53:58 +0200
Source: symfit
Architecture: source
Version: 0.5.6-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Alexandre Detiste <tc...@debian.org>
Closes: 1064601 1067234 1067282
Changes:
symfit (0.5.6-3) unstable; urgency=medium
.
* Team upload
* Import Ubuntu 24.04 patch (Closes: #1067234, #1067282)
.
[ Stephan Lachnit ]
* Remove python3-six dependency (Closes: #1064601)
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56ddc68cbfe8850dbda95ff0241fe8e42296c7c0 5772 symfit_0.5.6-3.debian.tar.xz
15a271916cb38da451f460813ed8c3378c4323d6 13923 symfit_0.5.6-3_source.buildinfo
Checksums-Sha256:
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symfit_0.5.6-3.dsc
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symfit_0.5.6-3.debian.tar.xz
239bea4d9c756746cbf5fe402a08f42734c7e83a70f45537692c9ca370dd1c05 13923
symfit_0.5.6-3_source.buildinfo
Files:
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6c6fc4fc8b81dc7cfc81139bf4524bda 5772 python optional
symfit_0.5.6-3.debian.tar.xz
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symfit_0.5.6-3_source.buildinfo
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