Your message dated Wed, 08 Oct 2025 19:49:26 +0000
with message-id <[email protected]>
and subject line Bug#1116779: fixed in libpysal 4.12.1-2
has caused the Debian Bug report #1116779,
regarding libpysal: FTBFS with the nocheck build profile
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1116779: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1116779
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:libpysal
Version: 4.12.1-1
Severity: important
Tags: forky sid ftbfs
User: [email protected]
Usertags: ftbfs-nocheck-profile
Dear maintainer:
During a rebuild of all packages in unstable using the nocheck build profile,
your package failed to build.
Below you will find how the build ends (probably the most relevant part,
but not necessarily). If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202509/
A wiki page discussing how to reproduce bugs in this category and
possible solutions is available here:
https://wiki.debian.org/qa.debian.org/FTBFS/Nocheck
(It's a wiki, so you are welcome to contribute)
[ Note: This is RC, but I will wait at least two weeks before raising
the severities, there are a lot of gcc-15 and CMake 4 bugs open now ].
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:libpysal, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --sphinxdoc --buildsystem=pybuild
dh_auto_clean -O--sphinxdoc -O--buildsystem=pybuild
[... snipped ...]
copying build/lib/libpysal/graph/tests/test_contiguity.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph/tests
copying build/lib/libpysal/graph/tests/test_triangulation.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph/tests
copying build/lib/libpysal/graph/tests/test_set_ops.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph/tests
copying build/lib/libpysal/graph/tests/test_kernel.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph/tests
copying build/lib/libpysal/graph/tests/test_base.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph/tests
copying build/lib/libpysal/graph/tests/test_plotting.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph/tests
copying build/lib/libpysal/graph/tests/test_spatial_lag.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph/tests
copying build/lib/libpysal/graph/tests/test_indices.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph/tests
copying build/lib/libpysal/graph/tests/test_summary.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph/tests
copying build/lib/libpysal/graph/_plotting.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph
copying build/lib/libpysal/graph/_triangulation.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph
creating build/bdist.linux-x86_64/wheel/libpysal/graph/io
copying build/lib/libpysal/graph/io/_parquet.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph/io
copying build/lib/libpysal/graph/io/_gal.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph/io
copying build/lib/libpysal/graph/io/_gwt.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph/io
copying build/lib/libpysal/graph/base.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph
copying build/lib/libpysal/graph/_summary.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph
copying build/lib/libpysal/graph/_indices.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph
copying build/lib/libpysal/graph/_spatial_lag.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph
copying build/lib/libpysal/graph/_kernel.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph
copying build/lib/libpysal/graph/_set_ops.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph
copying build/lib/libpysal/graph/_raster.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph
copying build/lib/libpysal/graph/_utils.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph
copying build/lib/libpysal/graph/_network.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph
copying build/lib/libpysal/graph/_contiguity.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph
copying build/lib/libpysal/graph/_matching.py ->
build/bdist.linux-x86_64/wheel/./libpysal/graph
creating build/bdist.linux-x86_64/wheel/libpysal/cg
copying build/lib/libpysal/cg/__init__.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg
copying build/lib/libpysal/cg/shapely_ext.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg
creating build/bdist.linux-x86_64/wheel/libpysal/cg/tests
copying build/lib/libpysal/cg/tests/test_sphere.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg/tests
copying build/lib/libpysal/cg/tests/__init__.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg/tests
copying build/lib/libpysal/cg/tests/test_voronoi.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg/tests
copying build/lib/libpysal/cg/tests/test_segmentLocator.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg/tests
copying build/lib/libpysal/cg/tests/test_ashapes.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg/tests
copying build/lib/libpysal/cg/tests/test_locators.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg/tests
copying build/lib/libpysal/cg/tests/test_shapes.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg/tests
copying build/lib/libpysal/cg/tests/test_polygonQuadTreeStructure.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg/tests
copying build/lib/libpysal/cg/tests/test_standalone.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg/tests
copying build/lib/libpysal/cg/tests/test_rtree.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg/tests
copying build/lib/libpysal/cg/tests/test_geoJSON.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg/tests
copying build/lib/libpysal/cg/kdtree.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg
copying build/lib/libpysal/cg/sphere.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg
copying build/lib/libpysal/cg/alpha_shapes.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg
copying build/lib/libpysal/cg/polygonQuadTreeStructure.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg
copying build/lib/libpysal/cg/voronoi.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg
copying build/lib/libpysal/cg/segmentLocator.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg
copying build/lib/libpysal/cg/standalone.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg
copying build/lib/libpysal/cg/rtree.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg
creating build/bdist.linux-x86_64/wheel/libpysal/cg/ops
copying build/lib/libpysal/cg/ops/__init__.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg/ops
creating build/bdist.linux-x86_64/wheel/libpysal/cg/ops/tests
copying build/lib/libpysal/cg/ops/tests/__init__.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg/ops/tests
copying build/lib/libpysal/cg/ops/tests/test_tabular.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg/ops/tests
copying build/lib/libpysal/cg/ops/tests/test_shapely.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg/ops/tests
copying build/lib/libpysal/cg/ops/tests/test_accessors.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg/ops/tests
copying build/lib/libpysal/cg/ops/tabular.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg/ops
copying build/lib/libpysal/cg/ops/_accessors.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg/ops
copying build/lib/libpysal/cg/ops/_shapely.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg/ops
copying build/lib/libpysal/cg/ops/atomic.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg/ops
copying build/lib/libpysal/cg/shapes.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg
copying build/lib/libpysal/cg/locators.py ->
build/bdist.linux-x86_64/wheel/./libpysal/cg
running install_egg_info
Copying libpysal.egg-info to
build/bdist.linux-x86_64/wheel/./libpysal-4.12.1.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/libpysal-4.12.1.dist-info/WHEEL
creating
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_libpysal/.tmp-obs3t8er/libpysal-4.12.1-py3-none-any.whl'
and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'libpysal/__init__.py'
adding 'libpysal/common.py'
adding 'libpysal/cg/__init__.py'
adding 'libpysal/cg/alpha_shapes.py'
adding 'libpysal/cg/kdtree.py'
adding 'libpysal/cg/locators.py'
adding 'libpysal/cg/polygonQuadTreeStructure.py'
adding 'libpysal/cg/rtree.py'
adding 'libpysal/cg/segmentLocator.py'
adding 'libpysal/cg/shapely_ext.py'
adding 'libpysal/cg/shapes.py'
adding 'libpysal/cg/sphere.py'
adding 'libpysal/cg/standalone.py'
adding 'libpysal/cg/voronoi.py'
adding 'libpysal/cg/ops/__init__.py'
adding 'libpysal/cg/ops/_accessors.py'
adding 'libpysal/cg/ops/_shapely.py'
adding 'libpysal/cg/ops/atomic.py'
adding 'libpysal/cg/ops/tabular.py'
adding 'libpysal/cg/ops/tests/__init__.py'
adding 'libpysal/cg/ops/tests/test_accessors.py'
adding 'libpysal/cg/ops/tests/test_shapely.py'
adding 'libpysal/cg/ops/tests/test_tabular.py'
adding 'libpysal/cg/tests/__init__.py'
adding 'libpysal/cg/tests/test_ashapes.py'
adding 'libpysal/cg/tests/test_geoJSON.py'
adding 'libpysal/cg/tests/test_locators.py'
adding 'libpysal/cg/tests/test_polygonQuadTreeStructure.py'
adding 'libpysal/cg/tests/test_rtree.py'
adding 'libpysal/cg/tests/test_segmentLocator.py'
adding 'libpysal/cg/tests/test_shapes.py'
adding 'libpysal/cg/tests/test_sphere.py'
adding 'libpysal/cg/tests/test_standalone.py'
adding 'libpysal/cg/tests/test_voronoi.py'
adding 'libpysal/examples/__init__.py'
adding 'libpysal/examples/base.py'
adding 'libpysal/examples/builtin.py'
adding 'libpysal/examples/remotes.py'
adding 'libpysal/examples/tests/__init__.py'
adding 'libpysal/examples/tests/test_available.py'
adding 'libpysal/graph/__init__.py'
adding 'libpysal/graph/_contiguity.py'
adding 'libpysal/graph/_indices.py'
adding 'libpysal/graph/_kernel.py'
adding 'libpysal/graph/_matching.py'
adding 'libpysal/graph/_network.py'
adding 'libpysal/graph/_plotting.py'
adding 'libpysal/graph/_raster.py'
adding 'libpysal/graph/_set_ops.py'
adding 'libpysal/graph/_spatial_lag.py'
adding 'libpysal/graph/_summary.py'
adding 'libpysal/graph/_triangulation.py'
adding 'libpysal/graph/_utils.py'
adding 'libpysal/graph/base.py'
adding 'libpysal/graph/io/_gal.py'
adding 'libpysal/graph/io/_gwt.py'
adding 'libpysal/graph/io/_parquet.py'
adding 'libpysal/graph/tests/test_base.py'
adding 'libpysal/graph/tests/test_builders.py'
adding 'libpysal/graph/tests/test_contiguity.py'
adding 'libpysal/graph/tests/test_indices.py'
adding 'libpysal/graph/tests/test_kernel.py'
adding 'libpysal/graph/tests/test_matching.py'
adding 'libpysal/graph/tests/test_plotting.py'
adding 'libpysal/graph/tests/test_raster.py'
adding 'libpysal/graph/tests/test_set_ops.py'
adding 'libpysal/graph/tests/test_spatial_lag.py'
adding 'libpysal/graph/tests/test_summary.py'
adding 'libpysal/graph/tests/test_triangulation.py'
adding 'libpysal/graph/tests/test_utils.py'
adding 'libpysal/io/__init__.py'
adding 'libpysal/io/fileio.py'
adding 'libpysal/io/tables.py'
adding 'libpysal/io/geotable/__init__.py'
adding 'libpysal/io/geotable/dbf.py'
adding 'libpysal/io/geotable/file.py'
adding 'libpysal/io/geotable/shp.py'
adding 'libpysal/io/geotable/utils.py'
adding 'libpysal/io/geotable/wrappers.py'
adding 'libpysal/io/geotable/tests/__init__.py'
adding 'libpysal/io/geotable/tests/test_utils.py'
adding 'libpysal/io/iohandlers/__init__.py'
adding 'libpysal/io/iohandlers/arcgis_dbf.py'
adding 'libpysal/io/iohandlers/arcgis_swm.py'
adding 'libpysal/io/iohandlers/arcgis_txt.py'
adding 'libpysal/io/iohandlers/csvWrapper.py'
adding 'libpysal/io/iohandlers/dat.py'
adding 'libpysal/io/iohandlers/db.py'
adding 'libpysal/io/iohandlers/gal.py'
adding 'libpysal/io/iohandlers/geobugs_txt.py'
adding 'libpysal/io/iohandlers/geoda_txt.py'
adding 'libpysal/io/iohandlers/gwt.py'
adding 'libpysal/io/iohandlers/mat.py'
adding 'libpysal/io/iohandlers/mtx.py'
adding 'libpysal/io/iohandlers/pyDbfIO.py'
adding 'libpysal/io/iohandlers/pyShpIO.py'
adding 'libpysal/io/iohandlers/stata_txt.py'
adding 'libpysal/io/iohandlers/template.py'
adding 'libpysal/io/iohandlers/wk1.py'
adding 'libpysal/io/iohandlers/wkt.py'
adding 'libpysal/io/iohandlers/tests/__init__.py'
adding 'libpysal/io/iohandlers/tests/test_arcgis_dbf.py'
adding 'libpysal/io/iohandlers/tests/test_arcgis_swm.py'
adding 'libpysal/io/iohandlers/tests/test_arcgis_txt.py'
adding 'libpysal/io/iohandlers/tests/test_csvWrapper.py'
adding 'libpysal/io/iohandlers/tests/test_dat.py'
adding 'libpysal/io/iohandlers/tests/test_db.py'
adding 'libpysal/io/iohandlers/tests/test_gal.py'
adding 'libpysal/io/iohandlers/tests/test_geobugs_txt.py'
adding 'libpysal/io/iohandlers/tests/test_geoda_txt.py'
adding 'libpysal/io/iohandlers/tests/test_gwt.py'
adding 'libpysal/io/iohandlers/tests/test_mat.py'
adding 'libpysal/io/iohandlers/tests/test_mtx.py'
adding 'libpysal/io/iohandlers/tests/test_pyDbfIO.py'
adding 'libpysal/io/iohandlers/tests/test_pyShpIO.py'
adding 'libpysal/io/iohandlers/tests/test_stata_txt.py'
adding 'libpysal/io/iohandlers/tests/test_wk1.py'
adding 'libpysal/io/iohandlers/tests/test_wkt.py'
adding 'libpysal/io/tests/__init__.py'
adding 'libpysal/io/tests/test_FileIO.py'
adding 'libpysal/io/tests/test_Tables.py'
adding 'libpysal/io/util/__init__.py'
adding 'libpysal/io/util/shapefile.py'
adding 'libpysal/io/util/weight_converter.py'
adding 'libpysal/io/util/wkb.py'
adding 'libpysal/io/util/wkt.py'
adding 'libpysal/io/util/tests/__init__.py'
adding 'libpysal/io/util/tests/test_shapefile.py'
adding 'libpysal/io/util/tests/test_weight_converter.py'
adding 'libpysal/io/util/tests/test_wkt.py'
adding 'libpysal/weights/__init__.py'
adding 'libpysal/weights/_contW_lists.py'
adding 'libpysal/weights/adjtools.py'
adding 'libpysal/weights/contiguity.py'
adding 'libpysal/weights/distance.py'
adding 'libpysal/weights/gabriel.py'
adding 'libpysal/weights/raster.py'
adding 'libpysal/weights/set_operations.py'
adding 'libpysal/weights/spatial_lag.py'
adding 'libpysal/weights/spintW.py'
adding 'libpysal/weights/user.py'
adding 'libpysal/weights/util.py'
adding 'libpysal/weights/weights.py'
adding 'libpysal/weights/tests/__init__.py'
adding 'libpysal/weights/tests/test_Wsets.py'
adding 'libpysal/weights/tests/test__contW_lists.py'
adding 'libpysal/weights/tests/test_adjlist.py'
adding 'libpysal/weights/tests/test_contiguity.py'
adding 'libpysal/weights/tests/test_distance.py'
adding 'libpysal/weights/tests/test_gabriel.py'
adding 'libpysal/weights/tests/test_nx.py'
adding 'libpysal/weights/tests/test_raster.py'
adding 'libpysal/weights/tests/test_spatial_lag.py'
adding 'libpysal/weights/tests/test_spintW.py'
adding 'libpysal/weights/tests/test_user.py'
adding 'libpysal/weights/tests/test_util.py'
adding 'libpysal/weights/tests/test_weights.py'
adding 'libpysal/weights/tests/test_weights_IO.py'
adding 'libpysal-4.12.1.dist-info/licenses/LICENSE.txt'
adding 'libpysal-4.12.1.dist-info/METADATA'
adding 'libpysal-4.12.1.dist-info/WHEEL'
adding 'libpysal-4.12.1.dist-info/top_level.txt'
adding 'libpysal-4.12.1.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Successfully built libpysal-4.12.1-py3-none-any.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with
"installer" module
PYTHONPATH=. https_proxy='https://127.0.0.1:9/' no_proxy=localhost python3 -m
sphinx -N -d debian/doctrees -bhtml docs/ debian/html
Running Sphinx v8.2.3
loading translations [en]... done
Extension error!
Versions
========
* Platform: linux;
(Linux-6.12.48+deb13-cloud-amd64-x86_64-with-glibc2.41)
* Python version: 3.13.7 (CPython)
* Sphinx version: 8.2.3
* Docutils version: 0.21.2
* Jinja2 version: 3.1.6
* Pygments version: 2.18.0
Last Messages
=============
None.
Loaded Extensions
=================
None.
Traceback
=========
File "/usr/lib/python3/dist-packages/sphinx/registry.py", line 544, in
load_extension
raise ExtensionError(
__('Could not import extension %s') % extname, err
) from err
sphinx.errors.ExtensionError: Could not import extension
matplotlib.sphinxext.plot_directive (exception: No module named 'matplotlib')
The full traceback has been saved in:
/tmp/sphinx-err-h7bi4rck.log
To report this error to the developers, please open an issue at
<https://github.com/sphinx-doc/sphinx/issues/>. Thanks!
Please also report this if it was a user error, so that a better error message
can be provided next time.
make[1]: *** [debian/rules:28: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:12: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: libpysal
Source-Version: 4.12.1-2
Done: Santiago Vila <[email protected]>
We believe that the bug you reported is fixed in the latest version of
libpysal, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Santiago Vila <[email protected]> (supplier of updated libpysal package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 08 Oct 2025 20:10:00 +0200
Source: libpysal
Architecture: source
Version: 4.12.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Santiago Vila <[email protected]>
Closes: 1116779
Changes:
libpysal (4.12.1-2) unstable; urgency=medium
.
* Team upload.
* d/control: Drop <!nocheck> from python3-matplotlib. Closes: #1116779.
* d/control: Drop "Rules-Requires-Root: no" (default).
* d/control: Update standards-version.
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Checksums-Sha256:
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libpysal_4.12.1-2_source.buildinfo
Files:
91dbfb112702f950d96e2cc4401c64d5 2437 python optional libpysal_4.12.1-2.dsc
5e1d97d23d692d61b76a74eb3a7fdb98 5120 python optional
libpysal_4.12.1-2.debian.tar.xz
23cad8ae2567af3b93d22cee2dd14aa8 10008 python optional
libpysal_4.12.1-2_source.buildinfo
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