Your message dated Tue, 05 Aug 2014 19:33:49 +0000 with message-id <e1xekux-0006xp...@franck.debian.org> and subject line Bug#576972: fixed in atlas 3.10.2-2 has caused the Debian Bug report #576972, regarding coinor-libipopt-dev: Missing ATL_*** symbols when linking to libipopt to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 576972: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=576972 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: coinor-libipopt-dev Version: 3.10.2-1.1 Severity: normal Dear Maintainer, I have written an m4 tests that looks for an installation of ipopt. While it has worked with hand-installed older versions of IPOpt (<=3.5.5), it doesn't work with the one in Debian, because it fails to link a test program. I attach the relevant snippet from my config.log. I'll be happy to provide more information if needed. PS: I am hacking my way around http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=684062 for this one. configure:38257: checking for IPOPT configure:38264: $PKG_CONFIG --exists --print-errors "ipopt" configure:38267: $? = 0 configure:38281: $PKG_CONFIG --exists --print-errors "ipopt" configure:38284: $? = 0 configure:38326: result: yes configure:38377: g++ -std=c++0x -o conftest -g -I/home/sander/include conftest.cpp -lm -lipopt -ldmumps -lblas -lm -ldl >&5 conftest.cpp:83:0: warning: "HAVE_BOOST" redefined [enabled by default] conftest.cpp:82:0: note: this is the location of the previous definition /usr/bin/ld: warning: libblas.so.3gf, needed by /usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib/libdmumps.so, may conflict with libblas.so.3 /usr/lib/liblapack.so.3: undefined reference to `ATL_zptgemm' /usr/lib/liblapack.so.3: undefined reference to `ATL_scopy' /usr/lib/liblapack.so.3: undefined reference to `ATL_stpsv' /usr/lib/liblapack.so.3: undefined reference to `ATL_dtrsv' /usr/lib/liblapack.so.3: undefined reference to `ATL_sptgemm' /usr/lib/liblapack.so.3: undefined reference to `ATL_zgemv' /usr/lib/liblapack.so.3: undefined reference to `ATL_cher' /usr/lib/liblapack.so.3: undefined reference to `ATL_ssbmv' /usr/lib/liblapack.so.3: undefined reference to `ATL_caxpy' /usr/lib/liblapack.so.3: undefined reference to `ATL_sptsymm' /usr/lib/liblapack.so.3: undefined reference to `ATL_cgerc' /usr/lib/liblapack.so.3: undefined reference to `ATL_dnrm2' /usr/lib/liblapack.so.3: undefined reference to `ATL_dsyreflect' /usr/lib/liblapack.so.3: undefined reference to `ATL_sdsdot' /usr/lib/liblapack.so.3: undefined reference to `ATL_zrotg' /usr/lib/liblapack.so.3: undefined reference to `ATL_strsv' [...] collect2: error: ld returned 1 exit status configure:38377: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "dune-solvers" | #define PACKAGE_TARNAME "dune-solvers" | #define PACKAGE_VERSION "0.10" | #define PACKAGE_STRING "dune-solvers 0.10" | #define PACKAGE_BUGREPORT "san...@mi.fu-berlin.de" | #define PACKAGE_URL "" | #define PACKAGE "dune-solvers" | #define VERSION "0.10" | #define DUNE_SOLVERS_VERSION "0.10" | #define DUNE_SOLVERS_VERSION_MAJOR 0 | #define DUNE_SOLVERS_VERSION_MINOR 10 | #define DUNE_SOLVERS_VERSION_REVISION 0 | #define PACKAGE "dune-solvers" | #define VERSION "0.10" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_BLAS 1 | #define HAVE_LAPACK 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define HAVE_STATIC_ASSERT 1 | #define HAVE_NULLPTR 1 | #define HAVE_TYPE_TRAITS 1 | #define HAVE_TR1_TYPE_TRAITS 1 | #define HAVE_TUPLE 1 | #define HAVE_TR1_TUPLE 1 | #define HAVE_ARRAY 1 | #define HAVE_MEMORY 1 | #define HAVE_TR1_MEMORY 1 | #define HAVE_BOOST_SHARED_PTR_HPP 1 | #define SHARED_PTR_NAMESPACE std | #define SHARED_PTR_HEADER <memory> | #define HAVE_MAKE_SHARED 1 | #define HAS_ATTRIBUTE_DEPRECATED 1 | #define HAS_ATTRIBUTE_DEPRECATED_MSG 1 | #define HAS_ATTRIBUTE_UNUSED 1 | #define DUNE_MINIMAL_DEBUG_LEVEL 4 | #define HAVE_RPC_RPC_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_MALLOC 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STRING_H 1 | #define HAVE_LIBM 1 | #define HAVE_SQRT 1 | #define HAVE_STRCHR 1 | #define HAVE_DUNE_COMMON 1 | #define DUNE_COMMON_VERSION "2.3-svn" | #define DUNE_COMMON_VERSION_MAJOR 2 | #define DUNE_COMMON_VERSION_MINOR 3 | #define DUNE_COMMON_VERSION_REVISION 0 | #define HAVE_DUNE_GEOMETRY 1 | #define DUNE_GEOMETRY_VERSION "2.3-svn" | #define DUNE_GEOMETRY_VERSION_MAJOR 2 | #define DUNE_GEOMETRY_VERSION_MINOR 3 | #define DUNE_GEOMETRY_VERSION_REVISION 0 | #define HAVE_PTHREAD 1 | #define HAVE_ALBERTA ENABLE_ALBERTA | #define DUNE_ALBERTA_VERSION 0x200 | #define HAVE_UG ENABLE_UG | #define HAVE_AMIRAMESH 1 | #define PSURFACE_NAMESPACE psurface:: | #define HAVE_PSURFACE 1 | #define HAVE_ALUGRID_SERIAL_H 1 | #define HAVE_ALUGRID_PARALLEL_H 1 | #define HAVE_ALUGRID ENABLE_ALUGRID | #define HAVE_DUNE_GRID 1 | #define DUNE_GRID_VERSION "2.3-svn" | #define DUNE_GRID_VERSION_MAJOR 2 | #define DUNE_GRID_VERSION_MINOR 3 | #define DUNE_GRID_VERSION_REVISION 0 | #define HAVE_BOOST /**/ | #define HAVE_BOOST ENABLE_BOOST | #define HAVE_BOOST_FUSION /**/ | #define HAVE_DUNE_ISTL 1 | #define DUNE_ISTL_VERSION "2.3-svn" | #define DUNE_ISTL_VERSION_MAJOR 2 | #define DUNE_ISTL_VERSION_MINOR 3 | #define DUNE_ISTL_VERSION_REVISION 0 | #define HAVE_LIBGMP 1 | #define HAVE_GMP ENABLE_GMP | #define HAVE_DUNE_LOCALFUNCTIONS 1 | #define DUNE_LOCALFUNCTIONS_VERSION "2.3-svn" | #define DUNE_LOCALFUNCTIONS_VERSION_MAJOR 2 | #define DUNE_LOCALFUNCTIONS_VERSION_MINOR 3 | #define DUNE_LOCALFUNCTIONS_VERSION_REVISION 0 | /* end confdefs.h. */ | #define HAVE_CSTDDEF | #include "coin/IpIpoptApplication.hpp" | #ifdef F77_DUMMY_MAIN | | # ifdef __cplusplus | extern "C" | # endif | int F77_DUMMY_MAIN() { return 1; } | | #endif | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | Ipopt::SmartPtr<Ipopt::IpoptApplication> app = new Ipopt::IpoptApplication(); | ; | return 0; | } configure:38381: WARNING: IPOpt does not seem to work! -- System Information: Debian Release: wheezy/sid APT prefers testing APT policy: (500, 'testing') Architecture: amd64 (x86_64) Kernel: Linux 3.2.0-3-amd64 (SMP w/8 CPU cores) Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Versions of packages coinor-libipopt-dev depends on: ii coinor-libipopt1 3.10.2-1.1 coinor-libipopt-dev recommends no packages. coinor-libipopt-dev suggests no packages. -- no debconf information
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--- Begin Message ---Source: atlas Source-Version: 3.10.2-2 We believe that the bug you reported is fixed in the latest version of atlas, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 576...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Sébastien Villemot <sebast...@debian.org> (supplier of updated atlas package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 05 Aug 2014 18:13:33 +0200 Source: atlas Binary: libatlas3-base libatlas3gf-base libatlas-base-dev libatlas-dev libatlas-test libatlas-doc Architecture: source all amd64 Version: 3.10.2-2 Distribution: unstable Urgency: medium Maintainer: Debian Science Team <debian-science-maintainers@lists.alioth.debian.org> Changed-By: Sébastien Villemot <sebast...@debian.org> Description: libatlas-base-dev - Automatically Tuned Linear Algebra Software, generic static libatlas-dev - Automatically Tuned Linear Algebra Software, C header files libatlas-doc - Automatically Tuned Linear Algebra Software, documentation libatlas-test - Automatically Tuned Linear Algebra Software, test programs libatlas3-base - Automatically Tuned Linear Algebra Software, generic shared libatlas3gf-base - Transitional package to libatlas3-base Closes: 576972 Changes: atlas (3.10.2-2) unstable; urgency=medium . * shared_libraries.diff: no longer include ATLAS-specific symbols in libblas.so and liblapack.so. Rather dynamically link those libraries with libatlas.so. This makes it possible to use liblapack.so from ATLAS with a libblas.so coming from somewhere else. Thanks to Guillem Jover for suggesting this solution. (Closes: #576972) * Revert back to a higher priority in the LAPACK alternatives. The priority had been lowered in 3.8.4-8 in order to minimize the incidence of #576972, so this is no longer needed. Checksums-Sha1: 44e2068df19fafa6f600effd088206cdf8b7fd07 2422 atlas_3.10.2-2.dsc fbe8e103c791b00efa9c915122f17210a0d1b8f9 109640 atlas_3.10.2-2.debian.tar.xz 303b22405fe6328de117e94cf4d3126b097ea320 51138 libatlas3gf-base_3.10.2-2_all.deb 3a9bf98a2ca69d4aeb16891e29e611c3085af3aa 68086 libatlas-dev_3.10.2-2_all.deb d7ba71298f634ec4583e82a04eab22fd3a9e466b 1148810 libatlas-doc_3.10.2-2_all.deb 38b61bb4dada606d9e3613e626142ed070fe7af1 2490864 libatlas3-base_3.10.2-2_amd64.deb 4c985c6108bc25d5b77427f9814be4132b319212 3097166 libatlas-base-dev_3.10.2-2_amd64.deb 64e618bdb5074933e8270ca9c427ffee0f02ff78 1777854 libatlas-test_3.10.2-2_amd64.deb Checksums-Sha256: 6b851bcac272f873daef03e815cfe8d6b649b0775be4cde7a46b8634816da22e 2422 atlas_3.10.2-2.dsc cdec7950fa6926e56194bc5b72de2bc3f17bc3238cd48c55546ab3dfcac5c716 109640 atlas_3.10.2-2.debian.tar.xz b9003002edcb93baa695825f860f18dc9d3c18d643fb09f626d0388ecc7647c9 51138 libatlas3gf-base_3.10.2-2_all.deb 27cceee5ad4ec3eb0a16cb5f7c15b703195d86331fbb3e804a6c90e8a89b8a13 68086 libatlas-dev_3.10.2-2_all.deb 8ff1869e1c1a2897814cb1e03e5e982091d79f3596fb294a32c3953e059d05a4 1148810 libatlas-doc_3.10.2-2_all.deb b32522cc5536f0bab8fac3aa35d0b1393ab8da20c8dba1f66f8a20bd609a55cc 2490864 libatlas3-base_3.10.2-2_amd64.deb 547d6ab4d2630c2a5a0ef74f53e5c3e1cb25c162e859f0f555e834e9d690eb73 3097166 libatlas-base-dev_3.10.2-2_amd64.deb 5c1b76d5f3215121c55a2a933dd708e8d97c3b131f44e9346da06cf46890b0bb 1777854 libatlas-test_3.10.2-2_amd64.deb Files: 23fe49f33f8fa1daf6598fc9d89f422e 51138 oldlibs optional libatlas3gf-base_3.10.2-2_all.deb d83589fa0f703e1ebcfce996b021c977 68086 libdevel optional libatlas-dev_3.10.2-2_all.deb a629460e5b4b4b27753bb4dddae55a1d 1148810 doc optional libatlas-doc_3.10.2-2_all.deb da3a534794e01dd82d21af7edb0e8c1e 2490864 libs optional libatlas3-base_3.10.2-2_amd64.deb 069f6ad5eaffc56ff1d6cad2ed1a8a5c 3097166 libdevel optional libatlas-base-dev_3.10.2-2_amd64.deb 137fb8a7a55c3ac910d284f482c75ee0 1777854 devel extra libatlas-test_3.10.2-2_amd64.deb dbfc23de4b16969f03e367189e0b9fb4 2422 devel optional atlas_3.10.2-2.dsc 68adc578ab4886f36e9dfb3eea8bb249 109640 devel optional atlas_3.10.2-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIbBAEBCAAGBQJT4Q2fAAoJECzs6TUOzr5KxxsP+IDsTX/DPLHJIsJ4yBRKr3Fx xdKdjaZAV1y0x9fvoN0/fM4Oyk1YruoQQCUZg4xEame+lgXCQJo0Vq1qnUFq2Ait o+Tr3A4rPkizY7LrOOljvENV04PRgoZl3jaZqVfBuPpo8q7XpU3b2pLajZRi4fFC +2vLM9MscQrFnaL1p7Iy/SSWgKPv4DrrUfXv9txEwpgHhTevKTO/XsUhfR5dCpS7 rfMftz2964mdkCpxyFQwgU+XzZ4kbnGTfJrY6lk+OSfWjTWwlhi8/BApu+kvjXru 4q+8bMpFVL6EykkMZfChV3QWF0BpqPUycz83ogGf1t7ToWmqgfpbGozzA9WbnIsu OQVkhqiGo3gRoUod8z5Tv2ep7qOQ/6R/gZgiTS13CpCzIQjtB0LFYFJpv5zCLQax sRifFIfixmB0fdJiG/amnBO9Yb5D35Di2FUi7gkA9FRiAwdRbwOFn21B3pH78DID Xh4JH7tNCF2kvDD4IQWl2/eMbjUXelJ7zSrVzMyqinmM4Djs8xs/f6mtN1FFj6YJ Aa+YvOaRgYqlwLcJINmvM1MDD7bi1mA9PxlSB9/zV2JbW/BZKrlq7IgMyW6WkLdM PacD8xK++2CrwhIzeaR/iZRWgFP7ZFEb1On0iHSSOw2oaEFvl3uD2ptAxTITRNtQ 5dlyPGm7IzP2kX7ExM8= =Da6q -----END PGP SIGNATURE-----
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