Your message dated Thu, 27 Oct 2016 13:35:51 +0000
with message-id <e1bzkqv-0005x5...@franck.debian.org>
and subject line Bug#836070: fixed in r-cran-sem 3.1.7-4
has caused the Debian Bug report #836070,
regarding r-cran-sem: FTBFS: ERROR: dependencies 'MASS', 'boot' are not
available for package 'sem'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
836070: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=836070
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: r-cran-sem
Version: 3.1.7-3
Severity: serious
Justification: fails to build from source
User: reproducible-bui...@lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org
Dear Maintainer,
r-cran-sem fails to build from source in unstable/amd64:
[..]
Selecting previously unselected package libpango-1.0-0:amd64.
Preparing to unpack .../34-libpango-1.0-0_1.40.1-1_amd64.deb ...
Unpacking libpango-1.0-0:amd64 (1.40.1-1) ...
Selecting previously unselected package libgraphite2-3:amd64.
Preparing to unpack .../35-libgraphite2-3_1.3.8-1_amd64.deb ...
Unpacking libgraphite2-3:amd64 (1.3.8-1) ...
Selecting previously unselected package libharfbuzz0b:amd64.
Preparing to unpack .../36-libharfbuzz0b_1.2.7-1+b1_amd64.deb ...
Unpacking libharfbuzz0b:amd64 (1.2.7-1+b1) ...
Selecting previously unselected package libpangoft2-1.0-0:amd64.
Preparing to unpack .../37-libpangoft2-1.0-0_1.40.1-1_amd64.deb ...
Unpacking libpangoft2-1.0-0:amd64 (1.40.1-1) ...
Selecting previously unselected package libpangocairo-1.0-0:amd64.
Preparing to unpack .../38-libpangocairo-1.0-0_1.40.1-1_amd64.deb ...
Unpacking libpangocairo-1.0-0:amd64 (1.40.1-1) ...
Selecting previously unselected package libsm6:amd64.
Preparing to unpack .../39-libsm6_2%3a1.2.2-1+b1_amd64.deb ...
Unpacking libsm6:amd64 (2:1.2.2-1+b1) ...
Selecting previously unselected package libtcl8.6:amd64.
Preparing to unpack .../40-libtcl8.6_8.6.6+dfsg-1_amd64.deb ...
Unpacking libtcl8.6:amd64 (8.6.6+dfsg-1) ...
Selecting previously unselected package libjbig0:amd64.
Preparing to unpack .../41-libjbig0_2.1-3.1_amd64.deb ...
Unpacking libjbig0:amd64 (2.1-3.1) ...
Selecting previously unselected package libtiff5:amd64.
Preparing to unpack .../42-libtiff5_4.0.6-2_amd64.deb ...
Unpacking libtiff5:amd64 (4.0.6-2) ...
Selecting previously unselected package libxft2:amd64.
Preparing to unpack .../43-libxft2_2.3.2-1_amd64.deb ...
Unpacking libxft2:amd64 (2.3.2-1) ...
Selecting previously unselected package libxss1:amd64.
Preparing to unpack .../44-libxss1_1%3a1.2.2-1_amd64.deb ...
Unpacking libxss1:amd64 (1:1.2.2-1) ...
Selecting previously unselected package libtk8.6:amd64.
Preparing to unpack .../45-libtk8.6_8.6.6-1_amd64.deb ...
Unpacking libtk8.6:amd64 (8.6.6-1) ...
Selecting previously unselected package libxt6:amd64.
Preparing to unpack .../46-libxt6_1%3a1.1.5-1_amd64.deb ...
Unpacking libxt6:amd64 (1:1.1.5-1) ...
Selecting previously unselected package openssl.
Preparing to unpack .../47-openssl_1.0.2h-1_amd64.deb ...
Unpacking openssl (1.0.2h-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../48-ca-certificates_20160104_all.deb ...
Unpacking ca-certificates (20160104) ...
Selecting previously unselected package r-base-core.
Preparing to unpack .../49-r-base-core_3.3.1-1+b1_amd64.deb ...
Unpacking r-base-core (3.3.1-1+b1) ...
Selecting previously unselected package libgfortran-6-dev:amd64.
Preparing to unpack .../50-libgfortran-6-dev_6.2.0-1_amd64.deb ...
Unpacking libgfortran-6-dev:amd64 (6.2.0-1) ...
Selecting previously unselected package gfortran-6.
Preparing to unpack .../51-gfortran-6_6.2.0-1_amd64.deb ...
Unpacking gfortran-6 (6.2.0-1) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../52-gfortran_4%3a6.1.1-1_amd64.deb ...
Unpacking gfortran (4:6.1.1-1) ...
Selecting previously unselected package libblas-dev.
Preparing to unpack .../53-libblas-dev_3.6.1-2_amd64.deb ...
Unpacking libblas-dev (3.6.1-2) ...
Selecting previously unselected package liblapack-dev.
Preparing to unpack .../54-liblapack-dev_3.6.1-2_amd64.deb ...
Unpacking liblapack-dev (3.6.1-2) ...
Selecting previously unselected package libtinfo-dev:amd64.
Preparing to unpack .../55-libtinfo-dev_6.0+20160625-1_amd64.deb ...
Unpacking libtinfo-dev:amd64 (6.0+20160625-1) ...
Selecting previously unselected package libncurses5-dev:amd64.
Preparing to unpack .../56-libncurses5-dev_6.0+20160625-1_amd64.deb ...
Unpacking libncurses5-dev:amd64 (6.0+20160625-1) ...
Selecting previously unselected package libreadline6-dev:amd64.
Preparing to unpack .../57-libreadline6-dev_6.3-8+b4_amd64.deb ...
Unpacking libreadline6-dev:amd64 (6.3-8+b4) ...
Selecting previously unselected package libreadline-dev:amd64.
Preparing to unpack .../58-libreadline-dev_6.3-8+b4_amd64.deb ...
Unpacking libreadline-dev:amd64 (6.3-8+b4) ...
Selecting previously unselected package libjpeg62-turbo-dev:amd64.
Preparing to unpack .../59-libjpeg62-turbo-dev_1%3a1.5.0-1_amd64.deb ...
Unpacking libjpeg62-turbo-dev:amd64 (1:1.5.0-1) ...
Selecting previously unselected package libjpeg-dev.
Preparing to unpack .../60-libjpeg-dev_1%3a1.5.0-1_all.deb ...
Unpacking libjpeg-dev (1:1.5.0-1) ...
Selecting previously unselected package libpcre16-3:amd64.
Preparing to unpack .../61-libpcre16-3_2%3a8.39-2_amd64.deb ...
Unpacking libpcre16-3:amd64 (2:8.39-2) ...
Selecting previously unselected package libpcre32-3:amd64.
Preparing to unpack .../62-libpcre32-3_2%3a8.39-2_amd64.deb ...
Unpacking libpcre32-3:amd64 (2:8.39-2) ...
Selecting previously unselected package libpcrecpp0v5:amd64.
Preparing to unpack .../63-libpcrecpp0v5_2%3a8.39-2_amd64.deb ...
Unpacking libpcrecpp0v5:amd64 (2:8.39-2) ...
Selecting previously unselected package libpcre3-dev:amd64.
Preparing to unpack .../64-libpcre3-dev_2%3a8.39-2_amd64.deb ...
Unpacking libpcre3-dev:amd64 (2:8.39-2) ...
Selecting previously unselected package zlib1g-dev:amd64.
Preparing to unpack .../65-zlib1g-dev_1%3a1.2.8.dfsg-2+b1_amd64.deb ...
Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ...
Selecting previously unselected package libpng-dev:amd64.
Preparing to unpack .../66-libpng-dev_1.6.24-2_amd64.deb ...
Unpacking libpng-dev:amd64 (1.6.24-2) ...
Selecting previously unselected package libbz2-dev:amd64.
Preparing to unpack .../67-libbz2-dev_1.0.6-8_amd64.deb ...
Unpacking libbz2-dev:amd64 (1.0.6-8) ...
Selecting previously unselected package liblzma-dev:amd64.
Preparing to unpack .../68-liblzma-dev_5.1.1alpha+20120614-2.1_amd64.deb ...
Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2.1) ...
Selecting previously unselected package icu-devtools.
Preparing to unpack .../69-icu-devtools_57.1-3_amd64.deb ...
Unpacking icu-devtools (57.1-3) ...
Selecting previously unselected package libicu-dev.
Preparing to unpack .../70-libicu-dev_57.1-3_amd64.deb ...
Unpacking libicu-dev (57.1-3) ...
Selecting previously unselected package cdbs.
Preparing to unpack .../71-cdbs_0.4.143_all.deb ...
Unpacking cdbs (0.4.143) ...
Selecting previously unselected package r-base-dev.
Preparing to unpack .../72-r-base-dev_3.3.1-1_all.deb ...
Unpacking r-base-dev (3.3.1-1) ...
Selecting previously unselected package r-cran-matrixcalc.
Preparing to unpack .../73-r-cran-matrixcalc_1.0.3-2_all.deb ...
Unpacking r-cran-matrixcalc (1.0.3-2) ...
Selecting previously unselected package r-cran-mi.
Preparing to unpack .../74-r-cran-mi_1.0-4_all.deb ...
Unpacking r-cran-mi (1.0-4) ...
Setting up cdbs (0.4.143) ...
Setting up libbz2-dev:amd64 (1.0.6-8) ...
Setting up libjpeg62-turbo:amd64 (1:1.5.0-1) ...
Processing triggers for mime-support (3.60) ...
Setting up libpng16-16:amd64 (1.6.24-2) ...
Setting up libjbig0:amd64 (2.1-3.1) ...
Setting up libcurl3:amd64 (7.50.1-1) ...
Setting up fonts-dejavu-core (2.37-1) ...
Setting up libblas-common (3.6.1-2) ...
Setting up libgfortran3:amd64 (6.2.0-1) ...
Setting up libgfortran-6-dev:amd64 (6.2.0-1) ...
Setting up unzip (6.0-20) ...
Setting up libtinfo-dev:amd64 (6.0+20160625-1) ...
Setting up libreadline6-dev:amd64 (6.3-8+b4) ...
Setting up libdatrie1:amd64 (0.2.10-2) ...
Setting up libtiff5:amd64 (4.0.6-2) ...
Setting up ucf (3.0036) ...
Setting up zip (3.0-11) ...
Setting up libfreetype6:amd64 (2.6.3-3+b1) ...
Setting up libgraphite2-3:amd64 (1.3.8-1) ...
Setting up libncurses5-dev:amd64 (6.0+20160625-1) ...
Setting up libpixman-1-0:amd64 (0.33.6-1) ...
Setting up libblas3 (3.6.1-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide
/usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Processing triggers for libc-bin (2.23-5) ...
Processing triggers for systemd (231-5) ...
Setting up openssl (1.0.2h-1) ...
Setting up libreadline-dev:amd64 (6.3-8+b4) ...
Processing triggers for man-db (2.7.5-1) ...
Setting up libpcrecpp0v5:amd64 (2:8.39-2) ...
Setting up libpcre32-3:amd64 (2:8.39-2) ...
Setting up icu-devtools (57.1-3) ...
Setting up libpcre16-3:amd64 (2:8.39-2) ...
Setting up libtcl8.6:amd64 (8.6.6+dfsg-1) ...
Setting up libthai-data (0.1.25-1) ...
Setting up libjpeg62-turbo-dev:amd64 (1:1.5.0-1) ...
Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2.1) ...
Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ...
Setting up x11-common (1:7.7+16) ...
update-rc.d: warning: start and stop actions are no longer supported; falling
back to defaults
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of start.
Setting up xdg-utils (1.1.1-1) ...
Setting up ca-certificates (20160104) ...
Setting up libx11-data (2:1.6.3-1) ...
Setting up libxau6:amd64 (1:1.0.8-1) ...
Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ...
Setting up libpaper1:amd64 (1.1.24+nmu4) ...
Creating config file /etc/papersize with new version
Setting up gfortran-6 (6.2.0-1) ...
Setting up libpaper-utils (1.1.24+nmu4) ...
Setting up libpcre3-dev:amd64 (2:8.39-2) ...
Setting up fontconfig-config (2.11.0-6.7) ...
Setting up liblapack3 (3.6.1-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide
/usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up libharfbuzz0b:amd64 (1.2.7-1+b1) ...
Setting up libthai0:amd64 (0.1.25-1) ...
Setting up libicu-dev (57.1-3) ...
Setting up libjpeg-dev (1:1.5.0-1) ...
Setting up libice6:amd64 (2:1.0.9-1+b1) ...
Setting up libpng-dev:amd64 (1.6.24-2) ...
Setting up libxcb1:amd64 (1.11.1-1.1) ...
Setting up gfortran (4:6.1.1-1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in
auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in
auto mode
Setting up libfontconfig1:amd64 (2.11.0-6.7) ...
Setting up libsm6:amd64 (2:1.2.2-1+b1) ...
Setting up libxcb-render0:amd64 (1.11.1-1.1) ...
Setting up libblas-dev (3.6.1-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide
/usr/lib/libblas.so (libblas.so) in auto mode
Setting up libx11-6:amd64 (2:1.6.3-1) ...
Setting up libxcb-shm0:amd64 (1.11.1-1.1) ...
Setting up libxt6:amd64 (1:1.1.5-1) ...
Setting up libxrender1:amd64 (1:0.9.9-2) ...
Setting up libxft2:amd64 (2.3.2-1) ...
Setting up fontconfig (2.11.0-6.7) ...
Regenerating fonts cache... done.
Setting up liblapack-dev (3.6.1-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide
/usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up libxext6:amd64 (2:1.3.3-1) ...
Setting up libxss1:amd64 (1:1.2.2-1) ...
Setting up libpango-1.0-0:amd64 (1.40.1-1) ...
Setting up libcairo2:amd64 (1.14.6-1+b1) ...
Setting up libtk8.6:amd64 (8.6.6-1) ...
Setting up libpangoft2-1.0-0:amd64 (1.40.1-1) ...
Setting up libpangocairo-1.0-0:amd64 (1.40.1-1) ...
Setting up r-base-core (3.3.1-1+b1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (3.3.1-1) ...
Setting up r-cran-matrixcalc (1.0.3-2) ...
Setting up r-cran-mi (1.0-4) ...
Setting up r-cran-sem-build-deps (3.1.7-3) ...
Processing triggers for libc-bin (2.23-5) ...
Processing triggers for systemd (231-5) ...
Processing triggers for ca-certificates (20160104) ...
Updating certificates in /etc/ssl/certs...
173 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
**************************************************************************************
** Environment
**
**************************************************************************************
PATH=/home/lamby/git/projects/dotfiles/dotfiles/..//bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
HOSTNAME=784ee88ee7f8
TERM=xterm
PAGER=more
DISPLAY=:0
DOCKER_IMAGE=lamby-debian-sid
DEB_BUILD_OPTIONS=parallel=9
PIP_DOWNLOAD_CACHE=/home/lamby/.cache/pip
HOME=/home/lamby
LOGNAME=lamby
SHLVL=1
PWD=/home/lamby/temp/cdt.20160830123358.Uwe7SlUpUo.db.r-cran-sem/r-cran-sem-3.1.7
OLDPWD=/home/lamby/temp/cdt.20160830123358.Uwe7SlUpUo.db.r-cran-sem
GPG_TTY=/dev/console
QUILT_PATCHES=debian/patches
QUILT_NO_DIFF_INDEX=1
QUILT_REFRESH_ARGS=-p ab --no-timestamps --no-index
DEBEMAIL=la...@debian.org
DEBFULLNAME=Chris Lamb
EDITOR=vim
LESS=-cgiFx4M
GPG_KEY=1E953E27D4311E58
BLASTER=A220 I5 D1 H5 P330 T6
_=/usr/bin/env
**************************************************************************************
** Building r-cran-sem 3.1.7-3 on amd64
**
**************************************************************************************
dpkg-buildpackage -rfakeroot -D -us -uc -b
dpkg-buildpackage: info: source package r-cran-sem
dpkg-buildpackage: info: source version 3.1.7-3
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Joost van Baal-Ili
<joos...@debian.org>
dpkg-source --before-build r-cran-sem-3.1.7
dpkg-buildpackage: info: host architecture amd64
fakeroot debian/rules clean
test -x debian/rules
dh_clean
if test -d src; then \
find src -regex ".*\.o" | \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
debian/rules build
test -x debian/rules
mkdir -p "."
fakeroot debian/rules binary
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
echo "R:Depends=r-base-core (>= 3.3.1-1), r-api-3" >>
debian/r-cran-sem.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
R CMD INSTALL -l
/home/lamby/temp/cdt.20160830123358.Uwe7SlUpUo.db.r-cran-sem/r-cran-sem-3.1.7/debian/r-cran-sem/usr/lib/R/site-library
--clean \
. \
"--built-timestamp=\"Mon, 29 Aug 2016 16:36:01
+0200\"" \
; \
else \
R CMD INSTALL -l
/home/lamby/temp/cdt.20160830123358.Uwe7SlUpUo.db.r-cran-sem/r-cran-sem-3.1.7/debian/r-cran-sem/usr/lib/R/site-library
\
--clean . \
"--built-timestamp=\"Mon, 29 Aug 2016 16:36:01
+0200\"" \
; \
fi
ERROR: dependencies 'MASS', 'boot' are not available for package 'sem'
* removing
'/home/lamby/temp/cdt.20160830123358.Uwe7SlUpUo.db.r-cran-sem/r-cran-sem-3.1.7/debian/r-cran-sem/usr/lib/R/site-library/sem'
/usr/share/R/debian/r-cran.mk:98: recipe for target 'R_any_arch' failed
make: *** [R_any_arch] Error 1
[..]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` la...@debian.org / chris-lamb.co.uk
`-
r-cran-sem.3.1.7-3.unstable.amd64.log.txt.gz
Description: Binary data
--- End Message ---
--- Begin Message ---
Source: r-cran-sem
Source-Version: 3.1.7-4
We believe that the bug you reported is fixed in the latest version of
r-cran-sem, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 836...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated r-cran-sem package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 26 Oct 2016 08:30:22 +0200
Source: r-cran-sem
Binary: r-cran-sem
Architecture: source amd64
Version: 3.1.7-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
r-cran-sem - GNU R functions for fitting structural equation models -- sem
Closes: 836070
Changes:
r-cran-sem (3.1.7-4) unstable; urgency=medium
.
* Team upload.
* cme fix dpkg-control
* Add Build-Depends: r-cran-boot, r-cran-mass
Closes: #836070
* Add further missing Build-Depends: r-cran-arm
* Do not Build-Depend from dpkg-dev unnecessarily
* Canonical CRAN homepage
* Fix d/copyright to match DEP5
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r-cran-sem-dbgsym_3.1.7-4_amd64.deb
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r-cran-sem_3.1.7-4_amd64.deb
Files:
8b1321b9ceb5c0a4090552057cff8d21 2056 gnu-r optional r-cran-sem_3.1.7-4.dsc
1ddba49f85ebdad353a950f350db0b35 1892 gnu-r optional
r-cran-sem_3.1.7-4.debian.tar.xz
38311e3b462ccaee29a2cc4eccc5ef76 153254 debug extra
r-cran-sem-dbgsym_3.1.7-4_amd64.deb
8fb8653375b5866bf478a8b5097ff21e 529788 gnu-r optional
r-cran-sem_3.1.7-4_amd64.deb
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--- End Message ---
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