Your message dated Fri, 28 Apr 2017 12:19:44 +0000 with message-id <e1d44sc-0007w7...@fasolo.debian.org> and subject line Bug#860014: fixed in mlpack 2.2.1-2 has caused the Debian Bug report #860014, regarding mlpack FTBFS on mips and mipsel: error: virtual memory exhausted to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 860014: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=860014 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: mlpack Version: 2.2.0-1 Severity: important Tags: sid + patch Justification: FTBFS User: debian-m...@lists.debian.org Usertags: mips-patch Package mlpack_2.2.0-1 FTBFS on mips and mipsel with following error: > [ 48%] Building CXX object > src/mlpack/methods/neighbor_search/CMakeFiles/mlpack_kfn.dir/kfn_main.cpp.o > cd /«PKGBUILDDIR»/obj-mipsel-linux-gnu/src/mlpack/methods/neighbor_search && > /usr/bin/g++ --param ggc-min-expand=20 -g0 -DARMA_32BIT_WORD > -DARMA_NO_DEBUG -DBOOST_TEST_DYN_LINK -DHAS_OPENMP -DNDEBUG -I/«PKGBUILDDIR» > -I/«PKGBUILDDIR»/src/mlpack/.. > -I/«PKGBUILDDIR»/obj-mipsel-linux-gnu/src/mlpack/.. -g -O2 > -fdebug-prefix-map=/«PKGBUILDDIR»=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra > -ftemplate-depth=1000 -O3 -fopenmp -std=gnu++11 -o > CMakeFiles/mlpack_kfn.dir/kfn_main.cpp.o -c > /«PKGBUILDDIR»/src/mlpack/methods/neighbor_search/kfn_main.cpp > > cc1plus: out of memory allocating 769440 bytes after a total of 26099712 bytes > src/mlpack/methods/neighbor_search/CMakeFiles/mlpack_knn.dir/build.make:65: > recipe for target > 'src/mlpack/methods/neighbor_search/CMakeFiles/mlpack_knn.dir/knn_main.cpp.o' > failed > make[4]: *** > [src/mlpack/methods/neighbor_search/CMakeFiles/mlpack_knn.dir/knn_main.cpp.o] > Error 1 > make[4]: Leaving directory '/«PKGBUILDDIR»/obj-mipsel-linux-gnu' > CMakeFiles/Makefile2:2659: recipe for target > 'src/mlpack/methods/neighbor_search/CMakeFiles/mlpack_knn.dir/all' failed > make[3]: *** > [src/mlpack/methods/neighbor_search/CMakeFiles/mlpack_knn.dir/all] Error 2 > make[3]: *** Waiting for unfinished jobs.... > virtual memory exhausted: Cannot allocate memory > src/mlpack/methods/neighbor_search/CMakeFiles/mlpack_kfn.dir/build.make:65: > recipe for target > 'src/mlpack/methods/neighbor_search/CMakeFiles/mlpack_kfn.dir/kfn_main.cpp.o' > failed > make[4]: *** > [src/mlpack/methods/neighbor_search/CMakeFiles/mlpack_kfn.dir/kfn_main.cpp.o] > Error 1 > make[4]: Leaving directory '/«PKGBUILDDIR»/obj-mipsel-linux-gnu' > CMakeFiles/Makefile2:2696: recipe for target > 'src/mlpack/methods/neighbor_search/CMakeFiles/mlpack_kfn.dir/all' failed > make[3]: *** > [src/mlpack/methods/neighbor_search/CMakeFiles/mlpack_kfn.dir/all] Error 2 > make[3]: Leaving directory '/«PKGBUILDDIR»/obj-mipsel-linux-gnu' > Makefile:141: recipe for target 'all' failed > make[2]: *** [all] Error 2 Full build log: https://buildd.debian.org/status/fetch.php?pkg=mlpack&arch=mipsel&ver=2.2.0-1&stamp=1490300651&raw=0 When ggc-min-expand is reduced from 20 to 5 and max-parallel from 2 to 1, package mlpack successfully passes for mips and mipsel. I have created and attached a patch that contains the necessary changes. Regards, Radovan--- mlpack-2.2.0_orig/debian/rules 2017-03-23 15:35:37.000000000 +0000 +++ mlpack-2.2.0/debian/rules 2017-04-10 06:25:25.000000000 +0000 @@ -31,8 +31,13 @@ SAVE_SPACE=yes endif ifeq ($(SAVE_SPACE),yes) -export CXX=g++ --param ggc-min-expand=20 -g0 -DH_FLAGS += --max-parallel=2 +ifneq (, $(filter $(shell dpkg-architecture -qDEB_HOST_ARCH_CPU),mips mipsel)) + export CXX=g++ --param ggc-min-expand=5 -g0 + DH_FLAGS += --max-parallel=1 +else + export CXX=g++ --param ggc-min-expand=20 -g0 + DH_FLAGS += --max-parallel=2 +endif endif %:
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--- Begin Message ---Source: mlpack Source-Version: 2.2.1-2 We believe that the bug you reported is fixed in the latest version of mlpack, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 860...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Barak A. Pearlmutter <b...@debian.org> (supplier of updated mlpack package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 28 Apr 2017 11:59:24 +0100 Source: mlpack Binary: libmlpack-dev libmlpack2 mlpack-bin mlpack-doc Architecture: source amd64 all Version: 2.2.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org> Changed-By: Barak A. Pearlmutter <b...@debian.org> Description: libmlpack-dev - intuitive, fast, scalable C++ machine learning library (developme libmlpack2 - intuitive, fast, scalable C++ machine learning library (runtime l mlpack-bin - intuitive, fast, scalable C++ machine learning library (binaries) mlpack-doc - intuitive, fast, scalable C++ machine learning library (documenta Closes: 860014 Changes: mlpack (2.2.1-2) unstable; urgency=medium . * Reduce build memory on architectures that need it (closes: #860014) Thanks to Radovan Birdic <radovan.bir...@imgtec.com> for the patch. Checksums-Sha1: 4e1c1fa2b4c16fcd59b9c7b33e68f5e99bf2ce60 2325 mlpack_2.2.1-2.dsc 5fe6587c650e487d69e24fe36cebe0da77414dae 7028 mlpack_2.2.1-2.debian.tar.xz f4e4b2efca27bc2e400e76663dd6f2af66bdb078 431060 libmlpack-dev_2.2.1-2_amd64.deb d2b80771572c17c6ade6fe22a94c3f1a5d0cc2a3 11261718 libmlpack2-dbgsym_2.2.1-2_amd64.deb e05b7a593f7b62e2851810421fc00f919ee1587d 760792 libmlpack2_2.2.1-2_amd64.deb 25d5f0481822b1f314bdfa73b5ee1923580d8e53 67103206 mlpack-bin-dbgsym_2.2.1-2_amd64.deb 8793a1080887b4b7d0eab8104dc9912b9e70bbee 5386960 mlpack-bin_2.2.1-2_amd64.deb fc47beb139adddc4ece1f8bfe8ef2aee299021ab 121698 mlpack-doc_2.2.1-2_all.deb 3ee602f9b27bbefb829b32ec4a7e0e45166da5a7 12589 mlpack_2.2.1-2_amd64.buildinfo Checksums-Sha256: 06fb26bdc5b7f48fe17cca5fbc72406e4a62f3fb264d885be338c21a76747b7a 2325 mlpack_2.2.1-2.dsc cc78957c27a1c12fe0c18118f916c8313c2db28f1b3413c865daad567c82cf4a 7028 mlpack_2.2.1-2.debian.tar.xz 6042ac8c866ec62d87b050102cf10570fb6d4c24b5452ee2f806b1b6ff6ebef5 431060 libmlpack-dev_2.2.1-2_amd64.deb c167d14b157fcbca6a491a495f9fbc1ee96095653c905a1f5648cfa3c483bb41 11261718 libmlpack2-dbgsym_2.2.1-2_amd64.deb 82ef12c8740fb37717827d674743ed1455a4b0c501ce09cdf94e3377dad28f6c 760792 libmlpack2_2.2.1-2_amd64.deb dcae9cef19de910c5269995752174a59bfe41a2aaaec9d82e3a0a1bb601059ef 67103206 mlpack-bin-dbgsym_2.2.1-2_amd64.deb 0487037610aff7943bc77fc1bbdc56c32e18e467334b3b01b1e9086a845e56bc 5386960 mlpack-bin_2.2.1-2_amd64.deb afdb7d9279d5ad60868d8f74f74257d69077c230d9e17f8109d95a987a9cc6b8 121698 mlpack-doc_2.2.1-2_all.deb 6d6fb9a567a34dc62def38cd1c2102f9bba257771a8b6a772692866c6ff138c7 12589 mlpack_2.2.1-2_amd64.buildinfo Files: 49091abe6f79b4ed899b75972d746ab0 2325 libs optional mlpack_2.2.1-2.dsc 2c14f8538843f0d1e496c4480a413124 7028 libs optional mlpack_2.2.1-2.debian.tar.xz 32ed72fe05244910795bab9ece9a0f0e 431060 libdevel optional libmlpack-dev_2.2.1-2_amd64.deb bc03af7f16dea3b28aeaf69086013c93 11261718 debug extra libmlpack2-dbgsym_2.2.1-2_amd64.deb dcca3eb023426234a43fedfd627e8361 760792 libs optional libmlpack2_2.2.1-2_amd64.deb 09a7b2de3c0b51183bbd827800b04e77 67103206 debug extra mlpack-bin-dbgsym_2.2.1-2_amd64.deb fe32ea2a65d872dc475af3b08fe1451b 5386960 science optional mlpack-bin_2.2.1-2_amd64.deb cdb17445235cae0ff30568cd599d1e02 121698 doc optional mlpack-doc_2.2.1-2_all.deb cc2f6712c3ef07621cfae22607cbaefc 12589 libs optional mlpack_2.2.1-2_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEZPQp426hHMLZZlRvEltXR14ZDRgFAlkDMC0ACgkQEltXR14Z DRhQThAAh4xGKIV+z4ZBNkN/ScMkAkOFEb04O/uYs7Nbdd2wcGRblaJXuM/+0Hh3 weV7t4R87T1XdMpiTlTX7++ZCmACIxg9/he/TXO7XKVPiPBdQSyYMqlfFQBUyxPW NSt4N6LV8LG3KoivZaJ+ypysja38C8Q/wWE7T18tAR30RFax9WQjBmZcY06K9wRo sYK4ORmhXwHvXdG69/MsZalcsYkaXzCNZ3JzUa72Z/HX9XShmUSCFC5v7w+wEtNY Osh1mSPB6j4qy9258p1Usy/5UiyJODaBMTLZDwMC+gPr1eOjdnQwZ1a3vx4JFTvH XOTe+Xd3T9y2eZNuc1AEnlJFJnKAsemBjEYRl/ni1ux51lQTPa7M1vzd6/B5wvkk ptpMVKpYe1WL6n05LqR/rLqMiTuwWGAlbTywHDK6uc6blFvvs7rU5Ae8OId7T7+U 8EgMFh8zrqv2748FlvdUvLJXsN/2BUCHx1MDwLIL+UQYReQniYzn43eQ+0NaksuS LrWLh/0QdATn3dksNDZF8JBf3805HNRGdSMv+Fuk382db3sNQlC3MYHWAZGFDUuk 1A0DehC4XhycXdPi6+3P8EU7+RGq7XEHE+bnvE89y5uHZfyPrAwjSoHH1nHoOiFw w3sbUvcghPRtVADdsGv+hd+6JXg+yvCQMVQaGR047WNkJ2xVYDM= =YgMP -----END PGP SIGNATURE-----
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