Your message dated Thu, 27 Jul 2017 12:34:13 +0000 with message-id <e1dahzz-000fmy...@fasolo.debian.org> and subject line Bug#865526: fixed in petsc 3.7.6+dfsg1-3 has caused the Debian Bug report #865526, regarding MPI upgrades make PETSc uninstallable to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 865526: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=865526 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: libpetsc3.7.5-dev Version: 3.7.5+dfsg1-4+b1 Severity: grave Justification: renders package unusable Dear Maintainer, since openmpi was upgraded in sid, libpetsc3.7.5-dev and libpetsc3.7.6-dev became uninstallable on sid, since they depend on libopenmpi-dev (< 2.0.3). I tried compiling the package from source but it gets stuck precisely when checking mpi. Upon further checking it looks like the openmpi development environment on my laptop is broken, despite all packages appear to be correctly installed: many libs are installed only under /usr/lib/x86_64-linux-gnu/openmpi/lib, with no soft links to /usr/lib/x86_64-linux-gnu (even if running dpkg -L libopenmpi2 says they should be!). Any chance to have petsc-dev installable again soon? petsc and slepc are key dependencies of my quite a bit of my home-developed scientific software. Any suggestion for a quick-n-dirty fix to get it to compile with the newer openmpi? Thanks in advance. I'll let you know if/when I can compile a working petsc package from source. Bye Giacomo -- System Information: Debian Release: 9.0 APT prefers buildd-unstable APT policy: (400, 'buildd-unstable'), (401, 'unstable'), (10, 'experimental') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 4.9.25-jak (SMP w/4 CPU cores) Locale: LANG=it_IT.utf8, LC_CTYPE=it_IT.utf8 (charmap=UTF-8) (ignored: LC_ALL set to it_IT.utf8), LANGUAGE=it_IT.utf8 (charmap=UTF-8) (ignored: LC_ALL set to it_IT.utf8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) Versions of packages libpetsc3.7.5-dev depends on: ii gfortran 4:6.3.0-4 ii libblacs-mpi-dev 1.1-40 ii libfftw3-dev 3.3.6p2-1 ii libfftw3-mpi-dev 3.3.6p2-1 ii libhdf5-mpi-dev 1.10.0-patch1+docs-3 ii libhypre-dev 2.11.1-3 ii libmumps-dev 4.10.0.dfsg-4+b2 ii libopenmpi-dev 2.1.1-4 ii libpetsc3.7.5 3.7.5+dfsg1-4+b1 ii libptscotch-dev 5.1.12b.dfsg-2.1 ii libscalapack-mpi-dev 1.8.0-14 ii libspooles-dev 2.2-12+b1 ii libssl-dev 1.1.0f-3 ii libsuitesparse-dev 1:4.5.5-1 ii libsuperlu-dev 5.2.1+dfsg1-2 ii python 2.7.13-2 Versions of packages libpetsc3.7.5-dev recommends: ii csh [c-shell] 20110502-2.2+b1 ii ksh 93u+20120801-3.1 ii mksh 54-2+b4 ii tcsh [c-shell] 6.20.00-7 ii zsh 5.3.1-5 Versions of packages libpetsc3.7.5-dev suggests: pn libluminate-dev <none> pn libpetsc3.7.5-dbg <none> pn petsc-dev <none> ii petsc3.7.5-doc 3.7.5+dfsg1-4
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--- Begin Message ---Source: petsc Source-Version: 3.7.6+dfsg1-3 We believe that the bug you reported is fixed in the latest version of petsc, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 865...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Drew Parsons <dpars...@debian.org> (supplier of updated petsc package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 27 Jul 2017 17:22:07 +0800 Source: petsc Binary: libpetsc3.7-dev libpetsc3.7.6-dev petsc-dev libpetsc3.7.6 libpetsc3.7.6-dbg petsc3.7.6-doc libpetsc-complex-3.7-dev libpetsc-complex-3.7.6-dev libpetsc-complex-3.7.6 libpetsc-complex-3.7.6-dbg Architecture: source Version: 3.7.6+dfsg1-3 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org> Changed-By: Drew Parsons <dpars...@debian.org> Description: libpetsc-complex-3.7-dev - Static libraries, shared links, header files for PETSc libpetsc-complex-3.7.6 - Shared libraries for version 3.7 of PETSc with Complex Numbers libpetsc-complex-3.7.6-dbg - Debugging libraries for PETSc libpetsc-complex-3.7.6-dev - Static libraries, shared links, header files for PETSc libpetsc3.7-dev - Static libraries, shared links, header files for PETSc libpetsc3.7.6 - Shared libraries for version 3.7 of PETSc libpetsc3.7.6-dbg - Debugging libraries for PETSc libpetsc3.7.6-dev - Static libraries, shared links, header files for PETSc petsc-dev - Virtual package depending on latest PETSc development package petsc3.7.6-doc - Documentation and examples for PETSc Closes: 865526 Changes: petsc (3.7.6+dfsg1-3) unstable; urgency=medium . * create mpi-version-test.patch to relax MPI version test to match minor, not patch (release) version in include/petscsys.h. Should simplify future openmpi upgrades, see debian/extract_MPI_dependency. Taken from upstream git (commits ca70f86, 41f4af4). Closes: #865526. * remove dependencies on libblacs-mpi-dev (explicit blacs support has not been a PETSc configuration option since 3.4) * drop Build-Depends: autotools-dev (autoreconf is now automatic in debhelper compat 10) Checksums-Sha1: 21a28006cf465e76e737f44dd5fdbdd380f61edb 3019 petsc_3.7.6+dfsg1-3.dsc f8c261ceeefccc15cb22f5f8ac71137f33cbb867 36480 petsc_3.7.6+dfsg1-3.debian.tar.xz Checksums-Sha256: f92f5c4282daadb9599a347809e0dc28892c02926e845909b7062a465564c271 3019 petsc_3.7.6+dfsg1-3.dsc c938f16d8b8b36d060e76da49d402fd620fe65f46cb448d9a11a40c6892f0504 36480 petsc_3.7.6+dfsg1-3.debian.tar.xz Files: b55e3667d33d86d67cbe9de32b27650a 3019 devel extra petsc_3.7.6+dfsg1-3.dsc 2dd7d7862b70ecbcd6e0fc79cdf27c60 36480 devel extra petsc_3.7.6+dfsg1-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEI8mpPlhYGekSbQo2Vz7x5L1aAfoFAll51usUHGRwYXJzb25z QGRlYmlhbi5vcmcACgkQVz7x5L1aAfoktw/8DFxc6dvcBIhnEZVDjUQZ637Pdeik GJ4JjZ4YzRlMSHQ0yT/9rRRVyEkoqgCzVGpqufiPcE/cPJUTYqAb08bfZBXvio3C aSZudsd8ILtkx6LWxJnddUx7pQNhK6DYIs/6U+UaQ9/7cTig0wTwvVVFgBpI4+lV hGp63/mTxdEdPK8SxnyDZ0/0rIFogbcuzwbHry0JkP2WG2rdN1CDyzPUT9iHpRYF nQRWO0FX4aw2Qzs3VQ/1aEEeKzVt8J7907ZYvYixcpTg4ipUCbmHoCXCrLcYjkNy MUinK+jiwFV7hlRxwvVaN1qmYzcMZHFt0+D5B2l7KdN9nh17T1WB8ME4o+LflLUy FzNigVem+IJe0WxwYftyDTVhofjriziW4zjqs7ylrMjxc63lwBEPx1ZwIbpOnYKs vYu8t1/mXMlhaudN++8vgiBwbZSSfgSgP+mrClNV8zAVbFd6W6R2v1tV+vheJ5/F 8CcPb8X6H3Vr+1sarkNQHv916kdEycPmIwz9G8n2koxL5TpjfyOA7mNV8aV3CBp0 wzzExL2F/wM4brq+GrId1Y7vpfuHqWWW3xnqqZ5hcF0p/cmyUtofi7bHADpDlw4x V4UUGG5YJgPCogH6BeidfePmzvW3YNoZYrj8T/AbUATlFOXiJBGO/twINSJLoZ93 9EN5Vu6XSsb4V1Q= =YUsH -----END PGP SIGNATURE-----
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