Your message dated Thu, 15 Mar 2018 19:08:33 +0100 with message-id <20180315180833.p27l3xbbbyt6z...@an3as.eu> and subject line Closing since new version seems not be affected any more has caused the Debian Bug report #751110, regarding r-cran-xts: Conflicting declarations of function endpoints to cause undefined behaviour to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 751110: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=751110 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: r-cran-xts Version: 0.9-7-1 Usertags: goto-cc During a rebuild of all Debian packages in a clean sid chroot (using cowbuilder and pbuilder) the build failed with the following error. Please note that we use our research compiler tool-chain (using tools from the cbmc package), which permits extended reporting on type inconsistencies at link time. [...] gcc -std=gnu99 -shared -Wl,-z,relro -o xts.so add_class.o any.o attr.o binsearch.o coredata.o diff.o dimnames.o endpoints.o extract_col.o init.o isOrdered.o isXts.o leadingNA.o merge.o period.max.o period.min.o period.prod.o period.sum.o rbind.o rollfun.o runSum.o startofyear.o subset.o subset.old.o toperiod.o totalcols.o tryXts.o unique.time.o -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR error: conflicting function declarations "endpoints" old definition in module endpoints file endpoints.c line 5 struct SEXPREC * (struct SEXPREC *_x, struct SEXPREC *_on, struct SEXPREC *_k, struct SEXPREC *_addlast) new definition in module init file xts.h line 80 struct SEXPREC * (struct SEXPREC *, struct SEXPREC *, struct SEXPREC *) /usr/share/R/share/make/shlib.mk:6: recipe for target 'xts.so' failed make[1]: *** [xts.so] Error 64 make[1]: Leaving directory '/srv/jenkins-slave/workspace/sid-goto-cc-r-cran-xts/r-cran-xts-0.9-7/src' make[1]: Entering directory '/srv/jenkins-slave/workspace/sid-goto-cc-r-cran-xts/r-cran-xts-0.9-7/src' make[1]: Leaving directory '/srv/jenkins-slave/workspace/sid-goto-cc-r-cran-xts/r-cran-xts-0.9-7/src' ERROR: compilation failed for package 'xts' * removing '/srv/jenkins-slave/workspace/sid-goto-cc-r-cran-xts/r-cran-xts-0.9-7/debian/r-cran-xts/usr/lib/R/site-library/xts' /usr/share/R/debian/r-cran.mk:76: recipe for target 'R_any_arch' failed make: *** [R_any_arch] Error 1 It seems that the declaration here http://sources.debian.net/src/r-cran-xts/0.9-7-1/src/xts.h?hl=80#L80 does not use the same number of parameters as the actual definition here http://sources.debian.net/src/r-cran-xts/0.9-7-1/src/endpoints.c?hl=5#L5 and thus any uses passing in only 3 arguments will have undefined behaviour. Doing a quick codesearch it seems a larger code review is required to establish and fix all these cases. Best, Michael
pgpEPrSmazhdZ.pgp
Description: PGP signature
--- End Message ---
--- Begin Message ---Hi, this package was upgraded to a newer upstream version which does not show this problem any more - thus I'm closing this bug. Kind regards Andreas. -- http://fam-tille.de
--- End Message ---
-- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
