Hi Steffen, Am Tue, Jul 11, 2023 at 10:02:53AM +0200 schrieb Steffen Möller: > EMMAX is (was) important > https://genome.sph.umich.edu/wiki/EMMAX > > but I admittedly cannot invest into maintaining this or atlas.
Sure we can't maintain this. > My suggestion would be to talk back to upstream about transitioning to an > alternative. I have no idea about how difficult this would be to patch > ourselves. Do you have some contact to upstream? The version number is beta-07Mar2010 ^^^^ which is usually a sign that upstream has orphaned this code long ago. If you can reach upstream it would be great if you could ping them somehow. Kind regards Andreas. > Best, > Steffen > > > Gesendet: Montag, 10. Juli 2023 um 22:01 Uhr > > Von: "Andreas Tille" <andr...@an3as.eu> > > An: debian-science@lists.debian.org > > Betreff: Re: Removing ATLAS? > > > > Hi Sébastian, > > > > Am Sat, Jul 08, 2023 at 10:01:15AM +0200 schrieb Sébastien Villemot: > > > > > > So, given all that, I’m inclined to (try to) remove atlas during the > > > trixie development cycle. > > > > Sounds reasonable. > > > > > Any thought on this? > > > > I've checked my responsibility for the dependencies and stumbled about > > emmax > > > > > > emmax.c:10:10: fatal error: clapack.h: No such file or directory > > 10 | #include <clapack.h> > > | ^~~~~~~~~~~ > > compilation terminated. > > > > > > and noticed > > > > $ apt-file search clapack.h > > libatlas-base-dev: /usr/include/x86_64-linux-gnu/clapack.h > > ... (other instances are not blas related) > > > > which was probably the reason why I've picked libatlas-base-dev > > originally. I would not say that emmax is important and its > > also a not maintained upstream any more. However, I vaguely > > remember that this > > #include <clapack.h> > > in some code pieces of Debian Med was the reason to actually > > pick this blas implementation. Any hint how to deal with such > > cases? > > > > Kind regards > > Andreas. > > > > > Checking reverse dependencies... > > > # Broken Depends: > > > ceres-solver: libceres-dev > > > libceres3 > > > colmap: colmap [amd64 arm64 i386 mips64el mipsel ppc64el s390x] > > > dune-common: libdune-common-dev > > > emmax: emmax > > > ergo: ergo > > > iml: libiml0 > > > nipy: python3-nipy-lib [armel mipsel] > > > psfex: psfex > > > python-escript: python3-escript [armel mipsel] > > > python3-escript-mpi [armel mipsel] > > > qm-dsp: libqm-dsp0 > > > scamp: scamp [amd64 arm64 mips64el ppc64el s390x] > > > scikit-misc: python3-skmisc > > > sight: libsight [amd64] > > > source-extractor: source-extractor > > > xmds2: xmds2 > > > > > > # Broken Build-Depends: > > > ceres-solver: libatlas-base-dev > > > dune-common: libatlas-base-dev > > > emmax: libatlas-base-dev > > > libatlas3-base > > > ergo: libatlas-base-dev > > > ghmm: libatlas-base-dev > > > halide: libatlas-base-dev > > > hpcc: libatlas-base-dev > > > iml: libatlas-base-dev > > > ncl: libatlas3-base > > > odin: libatlas-base-dev > > > opm-material: libatlas-base-dev > > > phast: libatlas-base-dev > > > plink1.9: libatlas-base-dev > > > plink2: libatlas-base-dev > > > psfex: libatlas-base-dev > > > qm-dsp: libatlas-base-dev > > > scamp: libatlas-base-dev > > > scikit-misc: libatlas-base-dev > > > source-extractor: libatlas-base-dev > > > theli: libatlas-base-dev > > > xmds2: libatlas-base-dev > > > > > > Dependency problem found. > > > > > > > > > > > > > -- > > http://fam-tille.de > > > > > > -- http://fam-tille.de