I have a strange setup issue.

I removed my emacs settings to redo them so now there are no theme commands
(clean .emacs). Now, when I open emacs from the menus or file manager (thunar)
it comes up in a dark text on light background theme (not very readable with
the match of fonts and colors), and when I open it from rxvt (or any other
console) it comes up in light text on dark background (much better for my
taste).

What is the difference, and how do I make one of them my default instead of
getting different behaviour?

Thanks


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