so it's a ATI driver issue. I tried on the desktop with Nivida driver (wheezy AMD64) it shows no problem but I gotta wait for 10 mins or more to start this program. it showed me lists of warnings at the end:
P.S The long warning list: Warning (from warnings module): File "/usr/lib/python2.6/dist-packages/DejaVu/Clip.py", line 98 self.Ri = glCleanRotMat(self.Ri) DeprecationWarning: PyArray_FromDims: use PyArray_SimpleNew. >>> Warning (from warnings module): File "/usr/lib/python2.6/dist-packages/DejaVu/Clip.py", line 98 self.Ri = glCleanRotMat(self.Ri) DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr. >>> Warning (from warnings module): File "/usr/lib/python2.6/dist-packages/DejaVu/Transformable.py", line 411 self.Ri = glCleanRotMat(self.Ri).astype('f') DeprecationWarning: PyArray_FromDims: use PyArray_SimpleNew. >>> Warning (from warnings module): File "/usr/lib/python2.6/dist-packages/DejaVu/Transformable.py", line 411 self.Ri = glCleanRotMat(self.Ri).astype('f') DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr. >>> Warning (from warnings module): File "/usr/lib/python2.6/dist-packages/geomutils/geomalgorithms.py", line 102 return triangleNormalsPerVertex(vertices, triangles) DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr. >>> Warning (from warnings module): File "/usr/lib/python2.6/dist-packages/geomutils/geomalgorithms.py", line 100 return triangleNormalsPerFace(vertices, triangles) DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr. >>> Warning (from warnings module): File "/usr/lib/python2.6/dist-packages/AutoDockTools/autoanalyzeCommands.py", line 75 import types, Tkinter, commands, os, copy, glob, popen2, time DeprecationWarning: The popen2 module is deprecated. Use the subprocess module. >>> Warning (from warnings module): File "/usr/lib/python2.6/dist-packages/bhtree/bhtreelib.py", line 167 def closePointsPairsInTree(self, *args): return _bhtreelib.BHtree_closePointsPairsInTree(self, *args) DeprecationWarning: PyArray_FromDims: use PyArray_SimpleNew. >>> Warning (from warnings module): File "/usr/lib/python2.6/dist-packages/bhtree/bhtreelib.py", line 167 def closePointsPairsInTree(self, *args): return _bhtreelib.BHtree_closePointsPairsInTree(self, *args) DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr. >>> Warning (from warnings module): File "/usr/lib/python2.6/dist-packages/DejaVu/Transformable.py", line 102 rot = glCleanRotMat(rot.ravel()) DeprecationWarning: PyArray_FromDims: use PyArray_SimpleNew. >>> Warning (from warnings module): File "/usr/lib/python2.6/dist-packages/DejaVu/Transformable.py", line 102 rot = glCleanRotMat(rot.ravel()) DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr. >>> Warning (from warnings module): File "/usr/lib/python2.6/dist-packages/DejaVu/Trackball.py", line 177 self.B1motion(event, self.tb.mat, self.vectorXY, self.vectorZ) DeprecationWarning: PyArray_FromDims: use PyArray_SimpleNew. >>> Warning (from warnings module): File "/usr/lib/python2.6/dist-packages/DejaVu/Trackball.py", line 177 self.B1motion(event, self.tb.mat, self.vectorXY, self.vectorZ) DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr. >>> Warning (from warnings module): File "/usr/lib/python2.6/dist-packages/DejaVu/glfLabels.py", line 411 rot = glCleanRotMat(m) #much faster than self.Decompose4x4(m) DeprecationWarning: PyArray_FromDims: use PyArray_SimpleNew. >>> Warning (from warnings module): File "/usr/lib/python2.6/dist-packages/DejaVu/glfLabels.py", line 411 rot = glCleanRotMat(m) #much faster than self.Decompose4x4(m) DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr. On Fri, May 27, 2011 at 10:12 PM, Camaleón <noela...@gmail.com> wrote: > On Fri, 27 May 2011 21:41:10 +0800, lina wrote: > >> On Fri, May 27, 2011 at 9:16 PM, Camaleón <noela...@gmail.com> wrote: >>> On Fri, 27 May 2011 16:28:37 +0800, lina wrote: >>> >>>> when I tried AutoDockTools, which showed me something like >>>> >>>> IndexError: list index out of range >>>> >>>> Is it something relevant to driver or Pmv or ? >>> >>> (...) >>> >>> Take a look into this thread: >>> >>> PMV or ADT stopped working on vista and debian >>> http://mgl.scripps.edu/forum/viewtopic.php?f=11&t=584 > > (...) > >> I tried the above advice before, it shows: > > (...) > >> File "/usr/lib/python2.6/dist-packages/DejaVu/Viewer.py", line 602, in >> Viewer >> if(maxClipP > 6): >> NameError: name 'maxClipP' is not defined hit enter to continue >> >> I don't know how to fix it. > > Hum... it is also reported in Debian BTS: > > runPmv crashes on start with index out of range for self.clipPlaneNames > [num] in .../DejaVu/Clip.py > http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=603022 > > Greetings, > > -- > Camaleón > > > -- > To UNSUBSCRIBE, email to debian-user-requ...@lists.debian.org > with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org > Archive: http://lists.debian.org/pan.2011.05.27.14.12...@gmail.com > > -- Best Regards, lina -- To UNSUBSCRIBE, email to debian-user-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/BANLkTi=ciiPOPhAL==tckv81raaiu+l...@mail.gmail.com