Thank you Zenaan for the link. 

You are right, I am very inexperienced when it comes to git however the command 
used with the preseed was 
"git clone https://github.com/project"; (d-i preseed/late_command string 
in-target git clone https://github.com/project). I just forgot to type it in 
the email :)

The problem is that when ran through preseed, there is no project directory. If 
I enter the command manually, all good, project folder is created.
                                          

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