Your message dated Sun, 01 Aug 2010 09:47:14 +0000
with message-id <e1ofv8u-00075g...@franck.debian.org>
and subject line Bug#587189: fixed in python-pynast 1.1-1
has caused the Debian Bug report #587189,
regarding ITP: python-nast -- alignment of short DNA sequences
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
587189: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=587189
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Steffen Moeller <steffen_moel...@gmx.de>
* Package name : python-nast
Version : 1.1
* URL : http://pynast.sf.net
* License : GPL
Programming Lang: Python
Description : alignment of short DNA sequences
The package provices a reimplementation of the Nearest Alignment
Space Termination tool in python. It was prepared for next generation
sequencers.
.
Given a set of sequences and a template alignment, PyNAST will align the
input sequences against the template alignment, and return a multiple
sequence alignment which contains the same number of positions (or
columns) as the template alignment. This facilitates the analysis of new
sequences in the context of existing alignments, and additional data
derived from existing alignments such as phylogenetic trees. Because
any protein or nucleic acid sequences and template alignments can be
provided, PyNAST is not limited to the analysis of 16s rDNA sequences.
.
Since version 1.1, PyNAST no longer exactly matches the output
of the origianl NAST program. Instead it focuses on getting better
alignments. Users who wish to exactly match the results of NAST should
download PyNAST 1.0.
.
PyNAST: a flexible tool for aligning sequences to a template
alignment. J. Gregory Caporaso, Kyle Bittinger, Frederic D. Bushman,
Todd Z. DeSantis, Gary L. Andersen, and Rob Knight. January 15, 2010,
DOI 10.1093/bioinformatics/btp636. Bioinformatics 26: 266-267.
--- End Message ---
--- Begin Message ---
Source: python-pynast
Source-Version: 1.1-1
We believe that the bug you reported is fixed in the latest version of
python-pynast, which is due to be installed in the Debian FTP archive:
python-pynast_1.1-1.debian.tar.gz
to contrib/p/python-pynast/python-pynast_1.1-1.debian.tar.gz
python-pynast_1.1-1.dsc
to contrib/p/python-pynast/python-pynast_1.1-1.dsc
python-pynast_1.1-1_all.deb
to contrib/p/python-pynast/python-pynast_1.1-1_all.deb
python-pynast_1.1.orig.tar.gz
to contrib/p/python-pynast/python-pynast_1.1.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 587...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sri Girish Srinivasa Murthy <srigir...@evolbio.mpg.de> (supplier of updated
python-pynast package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Sun, 25 Jul 2010 22:21:11 +0200
Source: python-pynast
Binary: python-pynast
Architecture: source all
Version: 1.1-1
Distribution: experimental
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sri Girish Srinivasa Murthy <srigir...@evolbio.mpg.de>
Description:
python-pynast - alignment of short DNA sequences
Closes: 587189
Changes:
python-pynast (1.1-1) experimental; urgency=low
.
* Initial release (Closes: #587189)
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