Your message dated Thu, 28 Jun 2012 16:32:09 +0000
with message-id <e1skhdz-0000qv...@franck.debian.org>
and subject line Bug#677648: fixed in fasttree 2.1.4-1
has caused the Debian Bug report #677648,
regarding ITP: fasttree -- phylogenetic trees from alignments of nucleotide or
protein sequences
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
677648: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=677648
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Thorsten Alteholz <deb...@alteholz.de>
* Package name : fasttree
Version : 2.1.4
Upstream Author : Morgan N. Price <fastt...@microbesonline.org>
* URL : http://www.microbesonline.org/fasttree/
* License : GPL2+
Programming Lang: C
Description : phylogenetic trees from alignments of nucleotide or
protein sequences
FastTree infers approximately-maximum-likelihood phylogenetic trees from
alignments of nucleotide or protein sequences. It handles alignments
with up to a million of sequences in a reasonable amount of time and
memory. For large alignments, FastTree is 100-1,000 times faster than
PhyML 3.0 or RAxML 7.
FastTree is more accurate than PhyML 3 with default settings, and much
more accurate than the distance-matrix methods that are traditionally
used for large alignments. FastTree uses the Jukes-Cantor or generalized
time-reversible (GTR) models of nucleotide evolution and the JTT
(Jones-Taylor-Thornton 1992) model of amino acid evolution. To account
for the varying rates of evolution across sites, FastTree uses a single
rate for each site (the "CAT" approximation). To quickly estimate the
reliability of each split in the tree, FastTree computes local support
values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's
"SH-like local supports").
--- End Message ---
--- Begin Message ---
Source: fasttree
Source-Version: 2.1.4-1
We believe that the bug you reported is fixed in the latest version of
fasttree, which is due to be installed in the Debian FTP archive:
fasttree_2.1.4-1.debian.tar.gz
to main/f/fasttree/fasttree_2.1.4-1.debian.tar.gz
fasttree_2.1.4-1.dsc
to main/f/fasttree/fasttree_2.1.4-1.dsc
fasttree_2.1.4-1_amd64.deb
to main/f/fasttree/fasttree_2.1.4-1_amd64.deb
fasttree_2.1.4.orig.tar.gz
to main/f/fasttree/fasttree_2.1.4.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 677...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Thorsten Alteholz <deb...@alteholz.de> (supplier of updated fasttree package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Fri, 15 Jun 2012 19:52:56 +0200
Source: fasttree
Binary: fasttree
Architecture: source amd64
Version: 2.1.4-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Thorsten Alteholz <deb...@alteholz.de>
Description:
fasttree - phylogenetic trees from alignments of nucleotide or protein seque
Closes: 677648
Changes:
fasttree (2.1.4-1) unstable; urgency=low
.
* Initial release (Closes: #677648)
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