Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Control: block 787977 by -1
* Package name : python-kineticstools Version : 0.5.1 Upstream Author : Pacific Biosciences <dev...@pacificbiosciences.com> * URL : https://github.com/PacificBiosciences/kineticsTools * License : BSD Programming Lang: Python Description : detecting DNA modifications from single molecule, real-time sequencing data kineticsTool loads IPDs observed at each position in the genome, and compares those IPDs to value expected for unmodified DNA, and outputs the result of this statistical test. The expected IPD value for unmodified DNA can come from either an in-silico control or an amplified control. The in silico control is trained by PacBio and shipped with the package. It predicts predicts the IPD using the local sequence context around the current position. An amplified control dataset is generated by sequencing unmodified DNA with the same sequence as the test sample. An amplified control sample is usually generated by whole-genome amplification of the original sample. This package is part of the SMRT Analysis suite and is to be handled by the Debian Med team.