Your message dated Fri, 04 Sep 2015 07:00:16 +0000
with message-id <e1zxkyu-0005hy...@franck.debian.org>
and subject line Bug#795822: fixed in python-cutadapt 1.8.3-1
has caused the Debian Bug report #795822,
regarding ITP: python-cutadapt -- cleaner for biological high sequencing data
reads
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
795822: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=795822
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Olivier Sallou <olivier.sal...@irisa.fr>
X-Debbugs-Cc: debian-...@lists.debian.org
* Package name : python-cutadapt
Version : 1.8.3
Upstream Author : Marcel Martin <marcel.mar...@scilifelab.se>
* URL : http://pypi.python.org/pypi/cutadapt
* License : MIT
Programming Lang: Python
Description : cleaner for biological high sequencing data reads
Cutadapt finds and removes adapter sequences, primers, poly-A tails and
other types of unwanted sequence from your high-throughput sequencing reads.
Cleaning your data in this way is often required: Reads from small-RNA
sequencing contain the 3’ sequencing adapter because the read is longer
than the molecule that is sequenced. Amplicon reads start with a primer
sequence. Poly-A tails are useful for pulling out RNA from your sample, but
often you don’t want them to be in your reads.
Cutadapt helps with these trimming tasks by finding the adapter or primer
sequences in an error-tolerant way. It can also modify and filter reads in
various ways. Adapter sequences can contain IUPAC wildcard characters.
Also, paired-end reads and even colorspace data is supported. If you want,
you can also just demultiplex your input data, without removing adapter
sequences at all.
Cutadapt comes with an extensive suite of automated tests and is available
under the terms of the MIT license.
Package will be managed under DebianMed team
--- End Message ---
--- Begin Message ---
Source: python-cutadapt
Source-Version: 1.8.3-1
We believe that the bug you reported is fixed in the latest version of
python-cutadapt, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 795...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Olivier Sallou <osal...@debian.org> (supplier of updated python-cutadapt
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 17 Aug 2015 09:09:04 +0200
Source: python-cutadapt
Binary: python-cutadapt python3-cutadapt
Architecture: source amd64
Version: 1.8.3-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Olivier Sallou <osal...@debian.org>
Description:
python-cutadapt - Clean biological sequences from high-throughput sequencing
reads
python3-cutadapt - Clean biological sequences from high-throughput sequencing
reads
Closes: 795822
Changes:
python-cutadapt (1.8.3-1) unstable; urgency=low
.
* Initial release (Closes: #795822)
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