Package: wnpp Severity: wishlist Owner: Dylan Aïssi <bob.dyb...@gmail.com>
Package name: bio-eagle URL: https://data.broadinstitute.org/alkesgroup/Eagle/ License: GPL3+ Description: Haplotype phasing within a genotyped cohort or using a phased reference panel Eagle estimates haplotype phase either within a genotyped cohort or using a phased reference panel. The basic idea of the Eagle1 algorithm is to harness identity-by-descent among distant relatives—which is pervasive at very large sample sizes but rare among smaller numbers of samples—to rapidly call phase using a fast scoring approach. In contrast, the Eagle2 algorithm analyzes a full probabilistic model similar to the diploid Li-Stephens model used by previous HMM-based methods. This package will be maintained by the Debian Med team at: https://anonscm.debian.org/git/debian-med/eagle.git Dylan