Hello Josh, I have some comments about your package description.
On Thu, Jul 17, 2003 at 11:01:50AM -0700, Josh Lauricha wrote:
> MUMmer is an open source software package for the rapid alignment of
> very large DNA and amino acid sequences. MUMmer relies on a suffice tree
^^^^^^^
suffix
> data structure for efficient pattern matching.
> .
> Suffix trees are suited for large data sets because they can be
> constructed and searched in linear time and space. This allows mummer to
^^^^^^
MUMmer
> find all 20 base pair maximal exact matches between two ~5 million base
> pair bacterial genomes in 20 seconds on a typicall desktop machine.
^^^^^^^^
typical
I hope this helps,
Jochen
--
Omm
(0)-(0)
http://www.mathematik.uni-kl.de/~wwwstoch/voss/index.html
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